BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA10RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1565 1025 0.0
>3x_Contig1565
Length = 10922
Score = 1025 bits (517), Expect = 0.0
Identities = 559/569 (98%), Gaps = 3/569 (0%)
Strand = Plus / Plus
Query: 48 ctgtccattaaatctactggaataaaacgctcagtttcagttggaaagaaaaaaaaaaga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6116 ctgtccattaaatctactggaataaaacgctcagtttcagttggaaagaaaaaaaaaaga 6175
Query: 108 catattccgaccaatgagagcggttcagataattttgaagaagcgtaatattgagaggga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6176 catattccgaccaatgagagcggttcagataattttgaagaagcgtaatattgagaggga 6235
Query: 168 caacaaactttttaccaacccatttcttgttgtgatctttccttacctaaaggaaattgc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6236 caacaaactttttaccaacccatttcttgttgtgatctttccttacctaaaggaaattgc 6295
Query: 228 aaaaagaaaaaaaagaaccgtcttcgaattccattccggccgatgagcaagtggtatttg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6296 aaaaagaaaaaaaagaaccgtcttcgaattccattccggccgatgagcaagtggtatttg 6355
Query: 288 ggaggtaacgtatcgactagtagtttatgcggttttcctactcaatcctttagaagcagc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6356 ggaggtaacgtatcgactagtagtttatgcggttttcctactcaatcctttagaagcagc 6415
Query: 348 gctagaaggcaaggaagcagaagacattttgtctaccttttcacagattccaaacagttg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6416 gctagaaggcaaggaagcagaagacattttgtctaccttttcacagattccaaacagttg 6475
Query: 408 atattttgggaaggactttccgtaaacattctgaaatctcgcattagatccgtagatagc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6476 atattttgggaaggactttccgtaaacattctgaaatctcgcattagatccgtagatagc 6535
Query: 468 gtcgtagcccaccgtgaacaagcc-aaaaagtgcacgcaaaaactacatgttatccgatg 526
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 6536 gtcgtagcccaccgtgaacaagccaaaaaagtgcacgcaaaaactacatgtaatccgatg 6595
Query: 527 gtccctgaagactttcacaaacacccatataatggggggcgcctgtgaagcaaaaaaagt 586
|||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 6596 gtcctgaaagactttcacaaacacccatataat-gggggcgcctgtgaagcagaaaaagt 6654
Query: 587 ttgtatgatccattttggcgtgccgaaat 615
| |||||||||| |||||||||| |||||
Sbjct: 6655 tagtatgatcca-tttggcgtgcggaaat 6682
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9018
Number of Sequences: 1807
Number of extensions: 9018
Number of successful extensions: 114
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)