BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA11FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 841 0.0
>3x_Contig1719
Length = 15804
Score = 841 bits (424), Expect = 0.0
Identities = 486/500 (97%), Gaps = 5/500 (1%)
Strand = Plus / Plus
Query: 88 ccttgtttttttttaggcctgctgactctaggctaatagtcaatgtacccttcggttgag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ccttgtttttttttaggcctgctgactctaggctaatagtcaatgtacccttcggttgag 768
Query: 148 aatagttgtggagcaaggtacataaagtgcagcaagattcttggtaggatataagttagg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aatagttgtggagcaaggtacataaagtgcagcaagattcttggtaggatataagttagg 828
Query: 208 tatatttttacataacggttgtttcgttatggatattacaagtagtttcgagaagttact 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tatatttttacataacggttgtttcgttatggatattacaagtagtttcgagaagttact 888
Query: 268 gtcattggagatgttgtttgtcctcttttcattttaatgtcttaatatagtaaatgacac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 gtcattggagatgttgtttgtcctcttttcattttaatgtcttaatatagtaaatgacac 948
Query: 328 tttaaattaccgaatgggatttaaaccattttctgactccaaggctcgaacaaagattta 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 tttaaattaccgaatgggatttaaaccattttctgactccaaggctcgaacaaagattta 1008
Query: 388 caaactttaaacacttgctgtaatatcccaccgatctgttcatagagcggcgttcttaca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 caaactttaaacacttgctgtaatatcccaccgatctgttcatagagcggcgttcttaca 1068
Query: 448 atccgttggacagcaaaattcagcatatattctctttaccctgttaccgtattattggtg 507
||||||||||||||||||| |||||||||||||| ||| |||| |||||||||| |||||
Sbjct: 1069 atccgttggacagcaaaatccagcatatattctc-ttaacctggtaccgtatta-tggtg 1126
Query: 508 gacgattttgtacgatctttccttaccgcaacgagatagcattgtctgaagatgtgtatt 567
|||||| |||||||||| ||||| |||||| |||||||||| |||| ||||||||||| |
Sbjct: 1127 gacgatattgtacgatc-ttcctcaccgcagcgagatagcagtgtc-gaagatgtgta-t 1183
Query: 568 tcggatttgtccttcacttt 587
|||||||||| || ||||||
Sbjct: 1184 tcggatttgtactccacttt 1203
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7442
Number of Sequences: 1807
Number of extensions: 7442
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)