BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZA12FM1.SCF screened BAC_end (906 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1608 971 0.0 >3x_Contig1608 Length = 13037 Score = 971 bits (490), Expect = 0.0 Identities = 606/642 (94%), Gaps = 2/642 (0%) Strand = Plus / Plus Query: 86 tcactttgaagcatttcgtacataggatcaatttctgattttttcagctttcctttattt 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6577 tcactttgaagcatttcgtacataggatcaatttctgattttttcagctttcctttattt 6636 Query: 146 tactgcaaagagaagccttagaggtctgaagccaactttgacatttaggtcagatcaact 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6637 tactgcaaagagaagccttagaggtctgaagccaactttgacatttaggtcagatcaact 6696 Query: 206 aaagatagacctaatgcaatatatacaattgtaaggaatcaaaagcatttaggtttaatt 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6697 aaagatagacctaatgcaatatatacaattgtaaggaatcaaaagcatttaggtttaatt 6756 Query: 266 tggtacagtgtaatggatgagcatcgatcaaggacaccaagtatagatagtaggaattat 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6757 tggtacagtgtaatggatgagcatcgatcaaggacaccaagtatagatagtaggaattat 6816 Query: 326 gctattccagaagcggattacctcccggcaggcattgacatagatagaaacggtgtgtct 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6817 gctattccagaagcggattacctcccggcaggcattgacatagatagaaacggtgtgtct 6876 Query: 386 gaatcagatgattcttccgatgatgatgctcaaagttcactatttccaacagaatccagt 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6877 gaatcagatgattcttccgatgatgatgctcaaagttcactatttccaacagaatccagt 6936 Query: 446 ggtacgttgtggatgaaccaaatccaagatacccctatggttgactcaagtaaatttcta 505 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct: 6937 ggtacgttgtggatgaaccaaatccaagatacgcctatgtttgactcaagtaaatttcta 6996 Query: 506 tttgagtcggtaaataatgcatttaacgatattgacttttcggaatcccttg-aatacaa 564 ||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| Sbjct: 6997 tttgagtcggtaaataatgcaataaacgatattgacttttcggaatcccttgcaatacaa 7056 Query: 565 gcaaagacatctgctttgtttatttgaaatagccgggagttgaaaggccttatttatgca 624 |||||||||||||| ||| ||| || || |||||||||||||||||||||||| | | Sbjct: 7057 gcaaagacatctgcattgattaattcgaagagccgggagttgaaaggccttattaagcaa 7116 Query: 625 tttcaggaaaaagtggattccttttttgaaaggtttaaccccggatctttggttttaacc 684 || ||||| ||||| |||| || | |||||||||||| | |||| || | || | || | Sbjct: 7117 ttacaggagaaagtagattactataatgaaaggtttaagcgcggagctgttgtatcaagc 7176 Query: 685 cattggaaggtt-acccccagatgcttttgaaacggattgca 725 || | ||||||| ||| |||||||||| ||||||||||||| Sbjct: 7177 caattgaaggttaacctacagatgctttcgaaacggattgca 7218 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9225 Number of Sequences: 1807 Number of extensions: 9225 Number of successful extensions: 65 Number of sequences better than 1.0e-20: 1 length of query: 906 length of database: 10,358,551 effective HSP length: 16 effective length of query: 890 effective length of database: 10,329,639 effective search space: 9193378710 effective search space used: 9193378710 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)