BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZA12FM1.SCF screened BAC_end
         (906 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1608                                                         971   0.0  

>3x_Contig1608 
          Length = 13037

 Score =  971 bits (490), Expect = 0.0
 Identities = 606/642 (94%), Gaps = 2/642 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   tcactttgaagcatttcgtacataggatcaatttctgattttttcagctttcctttattt 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6577 tcactttgaagcatttcgtacataggatcaatttctgattttttcagctttcctttattt 6636

                                                                        
Query: 146  tactgcaaagagaagccttagaggtctgaagccaactttgacatttaggtcagatcaact 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6637 tactgcaaagagaagccttagaggtctgaagccaactttgacatttaggtcagatcaact 6696

                                                                        
Query: 206  aaagatagacctaatgcaatatatacaattgtaaggaatcaaaagcatttaggtttaatt 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6697 aaagatagacctaatgcaatatatacaattgtaaggaatcaaaagcatttaggtttaatt 6756

                                                                        
Query: 266  tggtacagtgtaatggatgagcatcgatcaaggacaccaagtatagatagtaggaattat 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6757 tggtacagtgtaatggatgagcatcgatcaaggacaccaagtatagatagtaggaattat 6816

                                                                        
Query: 326  gctattccagaagcggattacctcccggcaggcattgacatagatagaaacggtgtgtct 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6817 gctattccagaagcggattacctcccggcaggcattgacatagatagaaacggtgtgtct 6876

                                                                        
Query: 386  gaatcagatgattcttccgatgatgatgctcaaagttcactatttccaacagaatccagt 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6877 gaatcagatgattcttccgatgatgatgctcaaagttcactatttccaacagaatccagt 6936

                                                                        
Query: 446  ggtacgttgtggatgaaccaaatccaagatacccctatggttgactcaagtaaatttcta 505
            |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 6937 ggtacgttgtggatgaaccaaatccaagatacgcctatgtttgactcaagtaaatttcta 6996

                                                                        
Query: 506  tttgagtcggtaaataatgcatttaacgatattgacttttcggaatcccttg-aatacaa 564
            ||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct: 6997 tttgagtcggtaaataatgcaataaacgatattgacttttcggaatcccttgcaatacaa 7056

                                                                        
Query: 565  gcaaagacatctgctttgtttatttgaaatagccgggagttgaaaggccttatttatgca 624
            |||||||||||||| ||| ||| ||  || |||||||||||||||||||||||| |   |
Sbjct: 7057 gcaaagacatctgcattgattaattcgaagagccgggagttgaaaggccttattaagcaa 7116

                                                                        
Query: 625  tttcaggaaaaagtggattccttttttgaaaggtttaaccccggatctttggttttaacc 684
            || ||||| ||||| |||| || |  |||||||||||| | |||| || | || | || |
Sbjct: 7117 ttacaggagaaagtagattactataatgaaaggtttaagcgcggagctgttgtatcaagc 7176

                                                      
Query: 685  cattggaaggtt-acccccagatgcttttgaaacggattgca 725
            || | ||||||| |||  |||||||||| |||||||||||||
Sbjct: 7177 caattgaaggttaacctacagatgctttcgaaacggattgca 7218


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9225
Number of Sequences: 1807
Number of extensions: 9225
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)