BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZA12RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1316 0.0
>3x_Contig1641
Length = 13261
Score = 1316 bits (664), Expect = 0.0
Identities = 743/766 (96%), Gaps = 3/766 (0%)
Strand = Plus / Plus
Query: 43 agctttatgtaattgagactactttcgagagaacgaagtcacgtgatggacatctggtga 102
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6700 agctttatgtaattgagactacaaccgagagaacgaagtcacgtgatggacatctggtga 6759
Query: 103 ttccaacgctagatacagcacactgtgtcctaatattgccaaagatcagctagaaatccc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6760 ttccaacgctagatacagcacactgtgtcctaatattgccaaagatcagctagaaatccc 6819
Query: 163 aatttcaagctgtttagcagtccacagatagtatggattggataagtcccctcaa-tcnc 221
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 6820 aatttcaagctgtttagcagtccacagatagtatggattggataagtccccccaaatcca 6879
Query: 222 tatgaaagccgtagggtccctgctatatcacttctttccattgctcagatgttgaatttg 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6880 gatgaaagccgtagggtccctgctatatcacttctttccattgctcagatgttgaatttg 6939
Query: 282 gtgaaacctttgtcacaagttttcggcaattttgttgttttgaaacgaaaatattaaaag 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6940 gtgaaacctttgtcacaagttttcggcaattttgttgttttgaaacgaaaatattaaaag 6999
Query: 342 gaagagttgtttatttcgccacctcaaagatatcagcggatcaagatagcaattggttgg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7000 gaagagttgtttatttcgccacctcaaagatatcagcggatcaagatagcaattggttgg 7059
Query: 402 aagaaggtggtacaataagctgctgtactgtttaattgaagtttgtttctccaagaattt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7060 aagaaggtggtacaataagctgctgtactgtttaattgaagtttgtttctccaagaattt 7119
Query: 462 caatacagtcgacacatcctttttattggttgaaaggacggacgaagagactaataacaa 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7120 caatacagtcgacacatcctttttattggttgaaaggacggacgaagagactaataacaa 7179
Query: 522 gcctttttttaatagaaacaatgggtcaanatttgtctaatcctgtaattgataaggaac 581
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7180 gcctttttttaatagaaacaatgggtcaaattttgtctaatcctgtaattgataaggaac 7239
Query: 582 aacattctggtagtgatgttttgactgcttttgggttatgtgctatgcaaggatggcgta 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7240 aacattctggtagtgatgttttgactgcttttgggttatgtgctatgcaaggatggcgta 7299
Query: 642 tgtctatggaagattctcacattggtgatttgaacatttctgatgatgagaaagagcatt 701
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 7300 tgtctatggaagattctcacattgttgatttgaacatttctgatgatgagaaggagcatt 7359
Query: 702 tggcgtactactgtgtgtttgacggacat-gtggttcaagcgttgctcaattctggggaa 760
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct: 7360 tggcgtactactgtgtgtttgacggacatggtggttcaagcgttgctcagttctgtggat 7419
Query: 761 tacaggtttccaa-attttacaaaaaaaggatgcttccaaaaagaa 805
|||| | ||||| |||||||||||| ||||||||| ||| |||||
Sbjct: 7420 cacagttctccaagattttacaaaaacaggatgctttcaagaagaa 7465
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7384
Number of Sequences: 1807
Number of extensions: 7384
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)