BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB01RM1.SCF screened BAC_end
(885 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1183 0.0
>3x_Contig1442
Length = 8270
Score = 1183 bits (597), Expect = 0.0
Identities = 659/673 (97%), Gaps = 5/673 (0%)
Strand = Plus / Minus
Query: 51 gcttcctgcgttaactcaaaag-tgttctggacaggttactatgccaaattaaaaatgaa 109
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7974 gcttcctgcgttaactcaaaaggtgttctggacaggttactatgccaaattaaaaatgaa 7915
Query: 110 gaagttccacattccaggtggtgacactctaggtaacattttgttcaagaaggtcagaga 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7914 gaagttccacattccaggtggtgacactctaggtaacattttgttcaagaaggtcagaga 7855
Query: 170 agccaccggtggtcatttaagatttgtgttgaacggtggttccccattgtctatatattc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 7854 agccaccggtggtcatttaagatttgtgttgaacggtggttccccattgtctagagaagc 7795
Query: 230 acaagagtttatcacaaacttgatttgtccaatgttgattggttatggtttgactgaaac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7794 acaagagtttatcacaaacttgatttgtccaatgttgattggttatggtttgactgaaac 7735
Query: 290 catggctaacacaactatcttacaaccagaacattttgaatacggagtcgctggtgacat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7734 catggctaacacaactatcttacaaccagaacattttgaatacggagtcgctggtgacat 7675
Query: 350 tgtcggtagtatcactgtcaagttggtcgacgttgaagaattgggctacttcgcaaagaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7674 tgtcggtagtatcactgtcaagttggtcgacgttgaagaattgggctacttcgcaaagaa 7615
Query: 410 ttctcaaggtgaagtctggattaaaggtgaacctgtcactcgagaatattacaaaaacga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7614 ttctcaaggtgaagtctggattaaaggtgaacctgtcactcgagaatattacaaaaacga 7555
Query: 470 ggaagagactaagggttctatcacagatgatggctggttcaaaactggtgacattgcgga 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7554 ggaagagactaagggttctatcacagatgatggctggttcaaaactggtgacattgcgga 7495
Query: 530 atggactccaaagggtcaattaaagattattgaccgtaaaaagaacttggtgaagactca 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7494 atggactccaaagggtcaattaaagattattgaccgtaaaaagaacttggtgaagactca 7435
Query: 590 gaatggtgaatacatcgcattagag-aggtagaatccgtttacagatcttgtccatttgt 648
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 7434 gaatggtgaatacatcgcattagagaagttagaatccgtttacagatcttgtccatttgt 7375
Query: 649 tc-aaacatctgtgtttagcctgatcaaacaaa-gttaaacccctcggtattattgttcc 706
|| ||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||
Sbjct: 7374 tcaaaacatctgtgtttacgctgatcaaacaaaggttaaacccgtcggtatcattgttcc 7315
Query: 707 -aatgaggctgcc 718
||||||||||||
Sbjct: 7314 aaatgaggctgcc 7302
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6532
Number of Sequences: 1807
Number of extensions: 6532
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 885
length of database: 10,358,551
effective HSP length: 16
effective length of query: 869
effective length of database: 10,329,639
effective search space: 8976456291
effective search space used: 8976456291
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)