BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB02FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig692 1189 0.0
>3x_Contig692
Length = 2077
Score = 1189 bits (600), Expect = 0.0
Identities = 701/728 (96%), Gaps = 5/728 (0%)
Strand = Plus / Minus
Query: 86 acggtggtatgcgtggtatcaagggtcttgtttgggaaggttccgttttggacccagaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2062 acggtggtatgcgtggtatcaagggtcttgtttgggaaggttccgttttggacccagaag 2003
Query: 146 aaggtattagattcagaggtcgtaccattccagatatccaaaaggaattgccaaaggcag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2002 aaggtattagattcagaggtcgtaccattccagatatccaaaaggaattgccaaaggcag 1943
Query: 206 ccgatggtgaagaaccattgccagaagctatcttttggttgcttttgaccggtgaagttc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 ccgatggtgaagaaccattgccagaagctatcttttggttgcttttgaccggtgaagttc 1883
Query: 266 caactgaaactcaagttaaggctttgtcagcagatttggcttctagatctgagttgccag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 caactgaaactcaagttaaggctttgtcagcagatttggcttctagatctgagttgccag 1823
Query: 326 ctcatgttgagtctctattggataacttaccaaaggatttgcatccaatggctcaattct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 ctcatgttgagtctctattggataacttaccaaaggatttgcatccaatggctcaattct 1763
Query: 386 cgatggcagttactgcattggaatcagaatccaaatttgccaaggcttacgctcaaggtg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 cgatggcagttactgcattggaatcagaatccaaatttgccaaggcttacgctcaaggtg 1703
Query: 446 tttctaagaaggattactggaactatacttttgaagattctttggatctattgggtaagt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 tttctaagaaggattactggaactatacttttgaagattctttggatctattgggtaagt 1643
Query: 506 tgccagttatcgcctccaagatttaccgtaacgttttcaaagacggtaagatcacttcca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 tgccagttatcgcctccaagatttaccgtaacgttttcaaagacggtaagatcacttcca 1583
Query: 566 ttgatcaaaacgccgattacggtaagaacttggcccatctatttgggttaccaaa-caaa 624
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 1582 ttgatcaaaacgccgattacggtaagaacttggcccatctatt-gggttaccaaaacaaa 1524
Query: 625 gagtttgtcgacttgatgagattggacttgaccattcattctgaccattaagggggtaac 684
|||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||||||
Sbjct: 1523 gagtttgtcgacttgatgagattgtacttgaccatccattctgaccatgaaggtggtaac 1464
Query: 685 gtttcagctcac-ctacccatttggttgggtc-ggattggcccttccat-tttattcttg 741
|||||||||||| |||||||||||||||| || | |||| || ||||| ||||| ||||
Sbjct: 1463 gtttcagctcacactacccatttggttggttctgcattgtcctctccatatttatccttg 1404
Query: 742 tcccctggttttaacgggttggttgggccttttgacggacctgccaaccaagaaattttg 801
||| ||||||| |||||||||| ||| || || |||||| ||| ||||||||| | |||
Sbjct: 1403 tccgctggtttgaacgggttggctggtccattgcacggacgtgcaaaccaagaagtcttg 1344
Query: 802 gaagggtt 809
||| ||||
Sbjct: 1343 gaatggtt 1336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6190
Number of Sequences: 1807
Number of extensions: 6190
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)