BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB02RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig948 1136 0.0
>3x_Contig948
Length = 3578
Score = 1136 bits (573), Expect = 0.0
Identities = 638/653 (97%), Gaps = 5/653 (0%)
Strand = Plus / Minus
Query: 49 atagaaacttcctcctgaattttgactctgaagtcaccagaaccatttaaattcggtaca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 atagaaacttcctcctgaattttgactctgaagtcaccagaaccatttaaattcggtaca 1012
Query: 109 tggtttggtccgcataatttcgtctcgacgtgtttcttgggtcttcccctcggtttcttc 168
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 aggtttggtccgcataatttcgtctcgacgtgtttcttgggtcttcccctcggtttcttc 952
Query: 169 accaaatttaccttatgttgtttgatatcacatttattattcgaatgtatcaatttacta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 accaaatttaccttatgttgtttgatatcacatttattattcgaatgtatcaatttacta 892
Query: 229 tactgtcgcaaatccataccaacagaggtgttagggttgagattagcacctgtcttagac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 tactgtcgcaaatccataccaacagaggtgttagggttgagattagcacctgtcttagac 832
Query: 289 attatcaatgtcagtataaccttaaaagtacccctgtttttttacgtcgaaataagatgc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 attatcaatgtcagtataaccttaaaagtacccctgtttttttacgtcgaaataagatgc 772
Query: 349 tgaatagcaacaaaggaccctggaaaaatatcaatcaattaaattcaagattaataatgt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgaatagcaacaaaggaccctggaaaaatatcaatcaattaaattcaagattaataatgt 712
Query: 409 atttcaccttggatttcagatcaaagacgttaccagttgctgttaacgcgctctattctt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 atttcaccttggatttcagatcaaagacgttaccagttgctgttaacgcgctctattctt 652
Query: 469 gaatattttgtatctaatcatcgtgtttttttaagatgaatcattttcgtttttaagtaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gaatattttgtatctaatcatcgtgtttttttaagatgaatcattttcgtttttaagtaa 592
Query: 529 gtgtgaaagatatatgtccgtcagcaaaaaaggcctaattgagtaattacaa-gacacca 587
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 591 gtgtgaaagatatatgtccgtcagc-aaaaaggcctaattgagtaattacaaggacacca 533
Query: 588 agtgagatataacaaagagattttggtagatgagggatgaaggatttgacggtgtaaag- 646
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 532 agtgagatataacaaagagatttgggtagatgagggatgagggatttgacggtgtaaagt 473
Query: 647 tgaatgtttgggagtttttttggccttgatttttc-atacttttccttttgcg 698
||||||| | ||| | |||||| |||||| |||| ||||||| |||||||||
Sbjct: 472 tgaatgtat-ggatgtattttgggcttgatatttcaatactttaccttttgcg 421
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6593
Number of Sequences: 1807
Number of extensions: 6593
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)