BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB03FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1191 0.0
>3x_Contig1652
Length = 14842
Score = 1191 bits (601), Expect = 0.0
Identities = 665/684 (97%), Gaps = 2/684 (0%)
Strand = Plus / Minus
Query: 91 agtcttaagatgtattcaggcaatgtgattcgaactaactggcctaaagtgacccttttg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9179 agtcttaagatgtattcaggcaatgtgattcgaactaactggcctaaagtgacccttttg 9120
Query: 151 attcaattcaagatactataatcttttatgttcaccgatgatatgatatgagatggttga 210
|||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct: 9119 attcaattcaagatactagaatcttttatgttcaccgatgagatgagatgagatggttga 9060
Query: 211 gcttcttcatgcaatttttcatgcagggtaagaaaaagaaatgatctgaaccttgtcgat 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9059 gcttcttcatgcaatttttcatgcagggtaagaaaaagaaatgatctgaaccttgtcgat 9000
Query: 271 atctaatcacgtgattctgcacgtgatctgatttttaagaatttaaggtattctgtcagt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8999 atctaatcacgtgattctgcacgtgatctgatttttaagaatttaaggtattctgtcagt 8940
Query: 331 tttgtagatattcctacatgtctctgccgtagtaactatggcccaagggcatatggaaaa 390
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 8939 tttgtagatattcctacatgtctctgccgtagtaactagggcccaagggcatatggaaaa 8880
Query: 391 aaaagcgttcatcgaaattcgaacatcaaaatgaaatcgaaatccaatcaaatgcacaaa 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8879 aaaagcgttcatcgaaattcgaacatcaaaatgaaatcgaaatccaatcaaatgcacaaa 8820
Query: 451 cagaacaggatagaacataggtcaatgaatcaacggttggattccgaataaaagtcgttt 510
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8819 cagaacaggatagaacaaaggtcaatgaatcaacggttggattccgaataaaagtcgttt 8760
Query: 511 gtttcattcgtttccctaaaagttgttgagttttttatctttagttcgtttgtgtggtga 570
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 8759 gtttcattcgtttccctaaaagttgttgtgttttttatctttagttcgtttgtgtggtga 8700
Query: 571 tttggatttcacaacaagaactgtacgttctacaccagttatattgttgtggatacgaga 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8699 tttggatttcacaacaagaactgtacgttctacaccagttatattgttgtggatacgaga 8640
Query: 631 caacatcttttgctcatagaaaacacatactgttcttattc-ttgcaatctgtgtgcgtg 689
|||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 8639 caacatcttttggtcatagaaaacacatactgttcttattctttccaatctgtgtgcgtg 8580
Query: 690 ttatttttactgacttgnaccaggaaagcttggataacaaagtc-tcagtggtgtggggt 748
| ||||||||||| ||| | |||||||||| |||||||| |||| ||||||||||| | |
Sbjct: 8579 taatttttactgagttgaagcaggaaagctaggataacagagtcttcagtggtgtgtgtt 8520
Query: 749 ttcttgttgagctttttatttttt 772
| ||||||||||||||||||||||
Sbjct: 8519 tccttgttgagctttttatttttt 8496
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8369
Number of Sequences: 1807
Number of extensions: 8369
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)