BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB03RM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1261 1316 0.0
>3x_Contig1261
Length = 9103
Score = 1316 bits (664), Expect = 0.0
Identities = 755/777 (97%), Gaps = 9/777 (1%)
Strand = Plus / Minus
Query: 46 cttcaaagactgaaaagtaaccatagtggatcagcatcagtttctgctattctggaagga 105
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8166 cttcaaagactgaaaagtaaccaaagtggatcagcatcagtttctgctattctggaagga 8107
Query: 106 tcgcctagtccatctcctatgctggaagaacctcatgcattccccttcattccgcaagca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8106 tcgcctagtccatctcctatgctggaagaacctcatgcattccccttcattccgcaagca 8047
Query: 166 ttattctctaatgaagctgtcacaaccaacactgacggatcaacaactccaagttcgaca 225
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8046 ttagtctctaatgaagctgtcacaaccaacactgacggatcaacaactccaagttcgaca 7987
Query: 226 aattcttcgaggaaagcttcaacttcctcgtccaagcctcagctaccaaagattggtaaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7986 aattcttcgaggaaagcttcaacttcctcgtccaagcctcagctaccaaagattggtaaa 7927
Query: 286 attggtgtttgtgccatggatgcgaaagtgttatccaagccatgcagacatatcttaaac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7926 attggtgtttgtgccatggatgcgaaagtgttatccaagccatgcagacatatcttaaac 7867
Query: 346 agactaattgaacacggtgagtttgagactataatttttggcgataaagttatattggat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7866 agactaattgaacacggtgagtttgagactataatttttggcgataaagttatattggat 7807
Query: 406 gaaagcattgaaaactggcctacttgcgactttctaatatcattcttttccaatgggttc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7806 gaaagcattgaaaactggcctacttgcgactttctaatatcattcttttccaatgggttc 7747
Query: 466 cctctagaaaaggctatcaaatatgtcaagttaagataaccatatatcattaatgatttg 525
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7746 cctctagaaaaggctatcaaatatgtcaagttaagaaaaccatatatcattaatgatttg 7687
Query: 526 attatgcaaaaagtattgtgggatagaaggttgtgtctcatgttgctggcggcaagcaac 585
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7686 attatgcaaaaagtattgtgggatagaaggttgtgtctcaggttgctggcggcaagcaac 7627
Query: 586 gtacctacccctcctagattggaaattacaagagatggtggtcccaagaattgatgatga 645
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 7626 gtacctacccctcctagattggaaattacaagagatggtggtcccaa-aattgatgatga 7568
Query: 646 actgaaatctatgcttgccgaacgtggagttattgtttcaactgttcaagaacccaactg 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7567 actgaaatctatgcttgccgaacgtggagttattgtttcaactgttcaagaacccaactg 7508
Query: 706 gagaatggtggacgatgacacctttggaaagtgaggggtaaaggtgatgaccanacccat 765
|||||||||||||||||||||| |||||| |||||| ||||||||||||| |||
Sbjct: 7507 gagaatggtggacgatgacacc-ttggaagttgaggg--taaggtgatgaccaaacc--a 7453
Query: 766 ttcgttg-ataacctgtggatggttgaagatcacatattataccatctattatcatt 821
||||||| | ||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct: 7452 ttcgttgaaaaacctgtggatgg-tgaagatcacaatatata-catctattatcatt 7398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6968
Number of Sequences: 1807
Number of extensions: 6968
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)