BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB04RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig917 1176 0.0
>3x_Contig917
Length = 3433
Score = 1176 bits (593), Expect = 0.0
Identities = 663/681 (97%), Gaps = 4/681 (0%)
Strand = Plus / Minus
Query: 49 ggacgttacctgatccatacagaagagagaaaggcattagcacggtctcttggtgatatt 108
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1901 ggacgttacctcatccagacagaagagagaaaggcattagcacggtctcttggtgatatt 1842
Query: 109 tgtcagataaaaaatccgccgctagaatatactgcctactagatcgagcatgagaaatga 168
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1841 t-tcagaaaaaaaatccgccgctagaatatactgcctactagatcgagcatgagaaatga 1783
Query: 169 aacacatttagaagaagaagaacaagaaaaggaagtaaattaaattctagatggacgacg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1782 aacacatttagaagaagaagaacaagaaaaggaagtaaattaaattctagatggacgacg 1723
Query: 229 ggttcgaatggaccggacagtgggtaagtatgtcaggcagcgtggcatgcagtcatgtac 288
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 1722 ggttcgaatggaccggacagtgggtaagtatgtcaggcagcgtggca-gcagtca-gtac 1665
Query: 289 gggataaactatgataccgaagaatgcactgggtagtaacaactgggcaggaggaataat 348
|||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 1664 gggataaattatgataccgaagaatgtactgtgtagtaacaactgggcaggaggaataat 1605
Query: 349 aacaagggaaaaaaattaggaaaacagagaaagaaaatccgctggctggcttacatgccc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1604 aacaagggaaaaaaattaggaaaacagagaaagaaaatccgctggctggcttacatgccc 1545
Query: 409 aggatgaaggttggcctgctgcaatattactttagtttatgtcacgttacgccatggcca 468
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1544 aggatgaaggttggcctgctgtaatattactttagtttatgtcacgttacgccatggcca 1485
Query: 469 attgacctgcgacaatgtcaatacagataaggagtgtttacccttaacgtgaagtctttc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1484 attgacctgcgacaatgtcaatacagataaggagtgtttacccttaacgtgaagtctttc 1425
Query: 529 atgtgcctgttcttttcacagtaatcaaaagactgagatgtcttgatttagatagcagtg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1424 atgtgcctgttcttttcacagtaatcaaaagactgagatgtcttgatttagatagcagtg 1365
Query: 589 aagagcggatcgacatagcgcattagatagcatttgggagatcagttggagttgcgatcg 648
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 1364 aagagcggatcgacatagcgcattagatagcatttgggagatcagttgaagttgcaatcg 1305
Query: 649 atcagatagaaatcaggtttcttttaaatcccacagtc-attccaaccctagattttcca 707
|||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||
Sbjct: 1304 atcagatagaaatccagtttcctttaaatcccacagtcaattccaaccctagatttttca 1245
Query: 708 gtagtgcagagtcatttaatg 728
||||||||||||||| |||||
Sbjct: 1244 gtagtgcagagtcatctaatg 1224
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6905
Number of Sequences: 1807
Number of extensions: 6905
Number of successful extensions: 178
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)