BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZB05FM1.SCF screened BAC_end (961 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1332 1023 0.0 >3x_Contig1332 Length = 6394 Score = 1023 bits (516), Expect = 0.0 Identities = 575/592 (97%), Gaps = 2/592 (0%) Strand = Plus / Minus Query: 86 cagaaagattaagggcacttcgtggttgataatagtgttcaatatactattaggaaactc 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3368 cagaaagattaagggcacttcgtggttgataatagtgttcaatatactattaggaaactc 3309 Query: 146 taagtaagtagtgtacatggtatattaattacaggatataagtaggaagaatttaactta 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3308 taagtaagtagtgtacatggtatattaattacaggatataagtaggaagaatttaactta 3249 Query: 206 ttgcattggcattggcattcctcttcctctagcaccttgtggaggagccatactagctcc 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3248 ttgcattggcattggcattcctcttcctctagcaccttgtggaggagccatactagctcc 3189 Query: 266 tgcagagtcactctctttattcttaatggtttcatccacggacaaaatcaggttggtagc 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3188 tgcagagtcactctctttattcttaatggtttcatccacggacaaaatcaggttggtagc 3129 Query: 326 ttcagtagcactgcttagggcattaatcttgactaaagcaggttcccagacaaatttgtt 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3128 ttcagtagcactgcttagggcattaatcttgactaaagcaggttcccagacaaatttgtt 3069 Query: 386 gaaattatcaccgatggtttcattgtcaaaatcaacaccataccacttctcacctttact 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3068 gaaattatcaccgatggtttcattgtcaaaatcaacaccataccacttctcacctttact 3009 Query: 446 gtgagccattcttagtctgttcaagatttccacagagtcgaaacctgcgttttcacttaa 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3008 gtgagccattcttagtctgttcaagatttccacagagtcgaaacctgcgttttcacttaa 2949 Query: 506 ctggcttggaataac-tccaatgctttggcaaatgcattgataattaattggtggttacc 564 ||| ||||| ||||| || |||||||||||||||||||||||||||||||| || ||||| Sbjct: 2948 ctgtcttggtataacttctaatgctttggcaaatgcattgataattaattgttgtttacc 2889 Query: 565 ggcaatgggctttgaataaacccttagatattttgaagattccatttctattgcaccacc 624 |||||||| |||||||||| | |||||||||||||| |||||||||||| |||||||| Sbjct: 2888 ggcaatggtctttgaataatctcttagatattttgagatttccatttctatagcaccacc 2829 Query: 625 cccacctactactagtttattttggaaaagcccttttaacgatcataatagc 676 |||||||||||||||||||||| | | |||||||||||||||||||||||| Sbjct: 2828 accacctactactagtttatttt-gtagagcccttttaacgatcataatagc 2778 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6923 Number of Sequences: 1807 Number of extensions: 6923 Number of successful extensions: 44 Number of sequences better than 1.0e-20: 1 length of query: 961 length of database: 10,358,551 effective HSP length: 16 effective length of query: 945 effective length of database: 10,329,639 effective search space: 9761508855 effective search space used: 9761508855 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)