BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZB05FM1.SCF screened BAC_end
         (961 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1332                                                        1023   0.0  

>3x_Contig1332 
          Length = 6394

 Score = 1023 bits (516), Expect = 0.0
 Identities = 575/592 (97%), Gaps = 2/592 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   cagaaagattaagggcacttcgtggttgataatagtgttcaatatactattaggaaactc 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3368 cagaaagattaagggcacttcgtggttgataatagtgttcaatatactattaggaaactc 3309

                                                                        
Query: 146  taagtaagtagtgtacatggtatattaattacaggatataagtaggaagaatttaactta 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3308 taagtaagtagtgtacatggtatattaattacaggatataagtaggaagaatttaactta 3249

                                                                        
Query: 206  ttgcattggcattggcattcctcttcctctagcaccttgtggaggagccatactagctcc 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3248 ttgcattggcattggcattcctcttcctctagcaccttgtggaggagccatactagctcc 3189

                                                                        
Query: 266  tgcagagtcactctctttattcttaatggtttcatccacggacaaaatcaggttggtagc 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3188 tgcagagtcactctctttattcttaatggtttcatccacggacaaaatcaggttggtagc 3129

                                                                        
Query: 326  ttcagtagcactgcttagggcattaatcttgactaaagcaggttcccagacaaatttgtt 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3128 ttcagtagcactgcttagggcattaatcttgactaaagcaggttcccagacaaatttgtt 3069

                                                                        
Query: 386  gaaattatcaccgatggtttcattgtcaaaatcaacaccataccacttctcacctttact 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3068 gaaattatcaccgatggtttcattgtcaaaatcaacaccataccacttctcacctttact 3009

                                                                        
Query: 446  gtgagccattcttagtctgttcaagatttccacagagtcgaaacctgcgttttcacttaa 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3008 gtgagccattcttagtctgttcaagatttccacagagtcgaaacctgcgttttcacttaa 2949

                                                                        
Query: 506  ctggcttggaataac-tccaatgctttggcaaatgcattgataattaattggtggttacc 564
            ||| ||||| ||||| || |||||||||||||||||||||||||||||||| || |||||
Sbjct: 2948 ctgtcttggtataacttctaatgctttggcaaatgcattgataattaattgttgtttacc 2889

                                                                        
Query: 565  ggcaatgggctttgaataaacccttagatattttgaagattccatttctattgcaccacc 624
            |||||||| |||||||||| | ||||||||||||||   |||||||||||| ||||||||
Sbjct: 2888 ggcaatggtctttgaataatctcttagatattttgagatttccatttctatagcaccacc 2829

                                                                
Query: 625  cccacctactactagtttattttggaaaagcccttttaacgatcataatagc 676
             |||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 2828 accacctactactagtttatttt-gtagagcccttttaacgatcataatagc 2778


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6923
Number of Sequences: 1807
Number of extensions: 6923
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)