BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB05RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig950 1080 0.0
>3x_Contig950
Length = 3159
Score = 1080 bits (545), Expect = 0.0
Identities = 661/689 (95%), Gaps = 8/689 (1%)
Strand = Plus / Minus
Query: 51 ctttacaaaaggtattaagcactgtattaacagctgtcaaagacgatgatgttccgtttg 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 ctttacaaaaggtattaagcactgtattaacagctgtcaaagacgatgatgttccgtttg 909
Query: 111 agagtgaagaagatacggatagtaaagtgtttgtgaacctggttagttccatcatatctg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 agagtgaagaagatacggatagtaaagtgtttgtgaacctggttagttccatcatatctg 849
Query: 171 agaatttgaatggaacaacttctgttgccgcaggtgtaattttgtgctggacactctttg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 agaatttgaatggaacaacttctgttgccgcaggtgtaattttgtgctggacactctttg 789
Query: 231 ttaatattccctcacagatcgatgttttattgcccttattgatgaaaactttcaacaaac 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ttaatattccctcacagatcgatgttttattgcccttattgatgaaaactttcaacaaac 729
Query: 291 tctgtaaggatcatttaaccatctcccagccaaaagacgccaccgctgtcgaagatgctc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tctgtaaggatcatttaaccatctcccagccaaaagacgccaccgctgtcgaagatgctc 669
Query: 351 gtataaccacgaaacttttgaagaaagttttctatatactttctttcaaagtatctaccc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gtataaccacgaaacttttgaagaaagttttctatatactttctttcaaagtatctaccc 609
Query: 411 ttggggattccagaaggccgtttttgtctacagtcgctttgttaatcgatcgttctatgg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttggggattccagaaggccgtttttgtctacagtcgctttgttaatcgatcgttctatgg 549
Query: 471 atcagaa-ttcttgcagaagattgttctcatcgctaaaaattgggttttcaccaatgaaa 529
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atcagaatttcttgcagaagattgttctcatcgctaaaaattgggttttcaccaatgaaa 489
Query: 530 tattccctactgttaaagaaaa-gcggcaatattgacaaagatgcttgcttttgaatttc 588
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct: 488 tattccctactgttaaagaaaaggcggcaatattgacaaagatgcttgcatttgaaattc 429
Query: 589 gtggagaacct-acctttctaaacagttttatg-aataattttgcaattgtttgaaaatt 646
||||||||||| |||||||||| |||||||||| |||||| ||||| |||||||| |||
Sbjct: 428 gtggagaacctcacctttctaagcagttttatgaaataatattgcagttgtttgagaata 369
Query: 647 aaaatttcacccaccgggaatttcccg-gggaatgggacaacc-tttttggttggaaccc 704
|||| | || | || | ||| || ||| | |||||| |||||| ||||||||||||||||
Sbjct: 368 aaaaatacaacaacagtgaaattaccgtgagaatggaacaaccatttttggttggaaccc 309
Query: 705 -catttcttgattttaaattaagggcgaa 732
|||||| |||| | ||||||||| ||||
Sbjct: 308 gcatttc-tgatataaaattaaggtcgaa 281
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8361
Number of Sequences: 1807
Number of extensions: 8361
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)