BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB06RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1093 1294 0.0
>3x_Contig1093
Length = 5169
Score = 1294 bits (653), Expect = 0.0
Identities = 682/691 (98%), Gaps = 1/691 (0%)
Strand = Plus / Minus
Query: 45 cttaaagaagcgttagtaaacggttgccgggagataaacgtaactgtaaaaaccgtcaac 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1704 cttaaagaagcgttagtaaacggttgccgggagataaacgtaactgtaaaaaccgtcaac 1645
Query: 105 gatattggttcccatatatatatatgcatctctgttttaatgtcatctcgacggttaatg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1644 gatattggttcccatatatatatatgcatctctgttttaatgtcatctcgacggttaatg 1585
Query: 165 aaaatttctggaaaatttatatggtgaaatctgtgggaaaaatgggcttataaatgtcac 224
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 1584 aaaatttctggaaaatttagatggtgaaatctgtgggaaaaatgggcttataaaggtcac 1525
Query: 225 gtggacagaaaatggagagcccaattaccatttatgatggcacttgtttcccttgtttcc 284
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1524 gtggacagaaaatggagagcccaattaccatttaggatggcacttgtttcccttgtttcc 1465
Query: 285 cttgtttctttatgatcggtgcggtggttgccaatagcttgacgggagcctttttgaact 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 cttgtttctttatgatcggtgcggtggttgccaatagcttgacgggagcctttttgaact 1405
Query: 345 gtgcagaatgcagccatggtatggataatggttccactttggtagagatcatctttgcaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 gtgcagaatgcagccatggtatggataatggttccactttggtagagatcatctttgcaa 1345
Query: 405 aatcctgataatgagcatgtgtgcgcacaagacacataccgtcatgcactacatccctga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 aatcctgataatgagcatgtgtgcgcacaagacacataccgtcatgcactacatccctga 1285
Query: 465 acgcgtcatcgaacttggccgacgagagtcgatgtaattggacaagcgtcactgtatggt 524
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1284 acgcgtcatcgaacttggccgacgagagtcgaggtaattggacaagcgtcactgtatggt 1225
Query: 525 ccgaggtttcacattagatangtaactgcgaaatt-aaactgacggcaaatctttattgc 583
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 1224 ccgaggtttcacataagataggtaactgcgaaattaaaactgacggcaaatctttattgc 1165
Query: 584 atacgaacagcatatattcatctttcccatggcttaaaagatcgacgatttcgttgaaac 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 atacgaacagcatatattcatctttcccatggcttaaaagatcgacgatttcgttgaaac 1105
Query: 644 caactgttatagattcttcattgntacccatattctgtaaaagcttccatctcttcaata 703
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 1104 caactgttatagattcttcattgttacccatatcctgtaaaagcttccatctcttcaata 1045
Query: 704 ctttctcctctaataactccaggactaattt 734
|||||||||||||||||||||||||||||||
Sbjct: 1044 ctttctcctctaataactccaggactaattt 1014
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8624
Number of Sequences: 1807
Number of extensions: 8624
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)