BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB07FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1208 1142 0.0
>3x_Contig1208
Length = 5550
Score = 1142 bits (576), Expect = 0.0
Identities = 622/631 (98%), Gaps = 6/631 (0%)
Strand = Plus / Plus
Query: 87 gaatggacaaggtgctcaaccattgctcatcaatatcgaaggtgtaaaaaactctgatat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2999 gaatggacaaggtgctcaaccattgctcatcaatatcgaaggtgtaaaaaactctgatat 3058
Query: 147 atcagaattaagagatggtcccgtaaaactatcaacgcaggcccattcttcagtagccaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 atcagaattaagagatggtcccgtaaaactatcaacgcaggcccattcttcagtagccaa 3118
Query: 207 gaatttttcttctttcagccctgatttaaacaagccagcattagaaccagttcatatcga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3119 gaatttttcttctttcagccctgatttaaacaagccagcattagaaccagttcatatcga 3178
Query: 267 agacgaagatgatgtgggtaagggaaaaaggaagcaaagagcccccatagtggctcgtgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3179 agacgaagatgatgtgggtaagggaaaaaggaagcaaagagcccccatagtggctcgtgc 3238
Query: 327 atttggtagaaactctttattgctaaggaaagatagaggaggactaccatacaagagggt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3239 atttggtagaaactctttattgctaaggaaagatagaggaggactaccatacaagagggt 3298
Query: 387 tcccgaagttcaccctaacacgtacccaataagaccagatacgtcggagaacgatgataa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3299 tcccgaagttcaccctaacacgtacccaataagaccagatacgtcggagaacgatgataa 3358
Query: 447 ctacgaagttcccacataaaaccttgcattttataacgtacctcacgacacattaataaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3359 ctacgaagttcccacataaaaccttgcattttataacgtacctcacgacacattaataaa 3418
Query: 507 tcattcaattttgtatatcgttatatacacgtatatatactgaacttctcagttgtactt 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3419 tcattcaattttgtatatcgttatatacacgtatatatactgaacttctcagttgtac-t 3477
Query: 567 agt-atgaccattagtcatttgtcaacaagtccctaaata-ctttaaacgctgtgataga 624
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3478 agtaatgaccattagtcatttgtcaacaagtccctaaatacctttaaacgctgtgataga 3537
Query: 625 gaatttttacgttattcttaatttcaaggggcttcctctttctcattttttaaatcacta 684
|||||||||||||||||||||||||| | | ||| |||||||||||||||||||||||||
Sbjct: 3538 gaatttttacgttattcttaatttcaggtgtctt-ctctttctcattttttaaatcacta 3596
Query: 685 tccgctgggaagggaatttatcatcatcatc 715
|||||||| |||||||||||||||||||||
Sbjct: 3597 tccgctgg--agggaatttatcatcatcatc 3625
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7332
Number of Sequences: 1807
Number of extensions: 7332
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)