BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB07RM1.SCF screened BAC_end
(883 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1628 1150 0.0
>3x_Contig1628
Length = 12927
Score = 1150 bits (580), Expect = 0.0
Identities = 637/651 (97%), Gaps = 4/651 (0%)
Strand = Plus / Minus
Query: 48 cgaggtcatctttctgatgatgagctaaaatgcattaagaagtacattaatcatgcaaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10364 cgaggtcatctttctgatgatgagctaaaatgcattaagaagtacattaatcatgcaaaa 10305
Query: 108 gaataccatttggcaactagaatttgggggatccctgattggccaatatccactagaaac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10304 gaataccatttggcaactagaatttgggggatccctgattggccaatatccactagaaac 10245
Query: 168 aggctatggaaacaacagttttatgatttaaacgtagattacatcaacacagatgatcta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10244 aggctatggaaacaacagttttatgatttaaacgtagattacatcaacacagatgatcta 10185
Query: 228 aaggatatcgcaaatttctgatatgtgcctaaacattctcgctagtacattttctctaat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10184 aaggatatcgcaaatttctgatatgtgcctaaacattctcgctagtacattttctctaat 10125
Query: 288 ctccaacagttcaatctataatgattaatatatatacttgtgattgataatcacaatacc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10124 ctccaacagttcaatctataatgattaatatatatacttgtgattgataatcacaatacc 10065
Query: 348 tgatataagatataaagctgttgtgctctcgttttctagaatgacccaatctactgattg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10064 tgatataagatataaagctgttgtgctctcgttttctagaatgacccaatctactgattg 10005
Query: 408 aaatgaatgaaattctagaataaagaataatatatcaccttccggaattccaatgatatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10004 aaatgaatgaaattctagaataaagaataatatatcaccttccggaattccaatgatatg 9945
Query: 468 gtcgatgcgagaaccgaagtaaaaaaaatttatgcaatgaggatttcgtttattatgaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9944 gtcgatgcgagaaccgaagtaaaaaaaatttatgcaatgaggatttcgtttataatgaat 9885
Query: 528 aaccatanattattctatgataaatcgtgtcctgctcttacattataatcttgaccattc 587
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9884 aaccataaattattctatgat-aatcgtgtcctgctcttacattataatcttgaccatcg 9826
Query: 588 gcgcattagccgatagttagaaatactc-aaaattataagatcca-ccatttctaccac- 644
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 9825 gcgcattagccgatagttagaaatactcaaaaattataagatccacccatttctaccacg 9766
Query: 645 gatgcagccttttttgacaaggtttctgaaacggagaaatgacagaatttc 695
|||||||||||| | ||||| || ||||| ||||||||||||||||||||
Sbjct: 9765 gatgcagcctttctgaacaagtttcctgaaccggagaaatgacagaatttc 9715
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7040
Number of Sequences: 1807
Number of extensions: 7040
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)