BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB08FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1639 1124 0.0
>3x_Contig1639
Length = 14140
Score = 1124 bits (567), Expect = 0.0
Identities = 640/659 (97%), Gaps = 4/659 (0%)
Strand = Plus / Plus
Query: 86 ctaaaaccactcattagaaacgaaatatgagaacactccgagtatacgggaaaaccaaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8850 ctaaaaccactcattagaaacgaaatatgagaacactccgagtatacgggaaaaccaaca 8909
Query: 146 atgcatcagctgttttttgacccattcgtaaccatttttgtttctctaattgctttcaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8910 atgcatcagctgttttttgacccattcgtaaccatttttgtttctctaattgctttcaat 8969
Query: 206 acaaccattgatatgccaagaagccctcaaaacttagatattctcttattcccgaccgaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8970 acaaccattgatatgccaagaagccctcaaaacttagatattctcttattcccgaccgaa 9029
Query: 266 ttgttattttgagactacatgaatgaggctaatatcttatgctcatagtaaacttaacca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9030 ttgttattttgagactacatgaatgaggctaatatcttatgctcatagtaaacttaacca 9089
Query: 326 actacccttaagttggccttaccttgtagttgagaaggagcatctggagaaataacatga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9090 actacccttaagttggccttaccttgtagttgagaaggagcatctggagaaataacatga 9149
Query: 386 aaaaaaaacccttcttaacgggaaaatctggttggaatcatgagatctatgtagtataga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9150 aaaaaaaacccttcttaacgggaaaatctggttggaatcatgagatctatgtagtataga 9209
Query: 446 atcagctgttttcgccagtccctgcctagcccatgagatatcgtaagatattgatgcgta 505
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 9210 atcagctgttttcgccagtccctgcctagcccatgagatatcgtaagaaattgatgcgta 9269
Query: 506 ccaagatggtaacgggtccgcactgggaaagtctcagtggagttaaagctgctgagtgat 565
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9270 ccaagatggtaacgggtccgcactggaaaagtctcagtggagttaaagctgctgagtgat 9329
Query: 566 aacagcacaacgctcccggatctaacctgt-aattctatatcatgcc-aagttttttcg- 622
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 9330 aacagcacaacgctcccggatctaacctgtaaattctatatcatgccaaagttttttcga 9389
Query: 623 aaagattgggtgtaccgattattagttaaaggg-aacccccaaaatttttttcacgtttt 681
||||||||||||||| |||||| |||||||||| ||| | ||||||| ||||||||||||
Sbjct: 9390 aaagattgggtgtacggattatcagttaaagggaaacgcacaaaattattttcacgtttt 9449
Query: 682 gagggacattctgaaaagaccgttttgcttgtaaggggtaaatccaccgtccgggaaat 740
|||| ||| ||||||||||||||| ||| ||| |||||||||| || ||| ||||||||
Sbjct: 9450 gaggtacaatctgaaaagaccgttatgcatgtcaggggtaaattcaacgtacgggaaat 9508
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6987
Number of Sequences: 1807
Number of extensions: 6987
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)