BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZB08RM1.SCF screened BAC_end
         (944 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1231                                                        1164   0.0  

>3x_Contig1231 
          Length = 5983

 Score = 1164 bits (587), Expect = 0.0
 Identities = 658/679 (96%), Gaps = 2/679 (0%)
 Strand = Plus / Minus

                                                                        
Query: 45   cttcgtaaagtaaatggaactttgacaaaatgttaccaatgtttagtggtaatgtattga 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4641 cttcgtaaagtaaatggaactttgacaaaatgttaccaatgtttagtggtaatgtattga 4582

                                                                        
Query: 105  atgaaaagttttgataatctgcaaaaaattgtttctatcgagctaatattatgtattaag 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4581 atgaaaagttttgataatctgcaaaaaattgtttctatcgagctaatattatgtattaag 4522

                                                                        
Query: 165  cgttaaaaccgaaaaactcaaaaaaatcgaagaactggttagtactgactaatattcagg 224
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||
Sbjct: 4521 cgttaaaaccgaaaaactcaaaaaaatcgaagaactggttagtactgactaagaaacagg 4462

                                                                        
Query: 225  tacaccacataatatattttaaattatcgaaattcattggtcaaatatcacgtgatcact 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4461 tacaccacataatatattttaaattatcgaaattcattggtcaaatatcacgtgatcact 4402

                                                                        
Query: 285  actgaaccgaagtgcggacgcccatcgtctgttctggaacttcactggtgagttgccttc 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4401 actgaaccgaagtgcggacgcccatcgtctgttctggaacttcactggtgagttgccttc 4342

                                                                        
Query: 345  atgatagcccgtaactagtcgaaatctattgnatggtattgcattgcacaattatttact 404
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4341 atgatagcccgtaactagtcgaaatctattg-atggtattgcattgcacaattatttact 4283

                                                                        
Query: 405  atacgtgattgtttagtagccagtccgctttggaaatcaaccatcgagcaattttaccag 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282 atacgtgattgtttagtagccagtccgctttggaaatcaaccatcgagcaattttaccag 4223

                                                                        
Query: 465  tgaaccatgaattcacatcataaacataagaaagtgtgttagccacctgggggcagccca 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4222 tgaaccatgaattcacatcataaacataagaaagtgtgttagccacctgggggcagccca 4163

                                                                        
Query: 525  tagacttatttttcacactaaagcttattcaatagtgatattctgttggtttagcgcctg 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4162 tagacttatttttcacactaaagcttattcaatagtgatattctgttggtttagcgcctg 4103

                                                                        
Query: 585  cagtgcttaggaaaggacacttctatagcaattttgtcacagccgatgggttttcattga 644
            |||||||  |||| | |||||   |||||||||| |||||||||||||||||||||||||
Sbjct: 4102 cagtgctagggaaggaacactctaatagcaatttggtcacagccgatgggttttcattga 4043

                                                                        
Query: 645  ggactttcaaagtcttatcccacttttaccacacttaacccgggttttccagtagcattg 704
            ||||||||||||||| ||||||||||  | ||||| |||||| | | |||||||||||||
Sbjct: 4042 ggactttcaaagtctcatcccactttaccaacactaaacccgcg-tatccagtagcattg 3984

                               
Query: 705  aagccaattctaggagttt 723
            |||||||| ||||||||||
Sbjct: 3983 aagccaatactaggagttt 3965


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7660
Number of Sequences: 1807
Number of extensions: 7660
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)