BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZB08RM1.SCF screened BAC_end (944 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1231 1164 0.0 >3x_Contig1231 Length = 5983 Score = 1164 bits (587), Expect = 0.0 Identities = 658/679 (96%), Gaps = 2/679 (0%) Strand = Plus / Minus Query: 45 cttcgtaaagtaaatggaactttgacaaaatgttaccaatgtttagtggtaatgtattga 104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4641 cttcgtaaagtaaatggaactttgacaaaatgttaccaatgtttagtggtaatgtattga 4582 Query: 105 atgaaaagttttgataatctgcaaaaaattgtttctatcgagctaatattatgtattaag 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4581 atgaaaagttttgataatctgcaaaaaattgtttctatcgagctaatattatgtattaag 4522 Query: 165 cgttaaaaccgaaaaactcaaaaaaatcgaagaactggttagtactgactaatattcagg 224 |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct: 4521 cgttaaaaccgaaaaactcaaaaaaatcgaagaactggttagtactgactaagaaacagg 4462 Query: 225 tacaccacataatatattttaaattatcgaaattcattggtcaaatatcacgtgatcact 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4461 tacaccacataatatattttaaattatcgaaattcattggtcaaatatcacgtgatcact 4402 Query: 285 actgaaccgaagtgcggacgcccatcgtctgttctggaacttcactggtgagttgccttc 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4401 actgaaccgaagtgcggacgcccatcgtctgttctggaacttcactggtgagttgccttc 4342 Query: 345 atgatagcccgtaactagtcgaaatctattgnatggtattgcattgcacaattatttact 404 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 4341 atgatagcccgtaactagtcgaaatctattg-atggtattgcattgcacaattatttact 4283 Query: 405 atacgtgattgtttagtagccagtccgctttggaaatcaaccatcgagcaattttaccag 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4282 atacgtgattgtttagtagccagtccgctttggaaatcaaccatcgagcaattttaccag 4223 Query: 465 tgaaccatgaattcacatcataaacataagaaagtgtgttagccacctgggggcagccca 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4222 tgaaccatgaattcacatcataaacataagaaagtgtgttagccacctgggggcagccca 4163 Query: 525 tagacttatttttcacactaaagcttattcaatagtgatattctgttggtttagcgcctg 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4162 tagacttatttttcacactaaagcttattcaatagtgatattctgttggtttagcgcctg 4103 Query: 585 cagtgcttaggaaaggacacttctatagcaattttgtcacagccgatgggttttcattga 644 ||||||| |||| | ||||| |||||||||| ||||||||||||||||||||||||| Sbjct: 4102 cagtgctagggaaggaacactctaatagcaatttggtcacagccgatgggttttcattga 4043 Query: 645 ggactttcaaagtcttatcccacttttaccacacttaacccgggttttccagtagcattg 704 ||||||||||||||| |||||||||| | ||||| |||||| | | ||||||||||||| Sbjct: 4042 ggactttcaaagtctcatcccactttaccaacactaaacccgcg-tatccagtagcattg 3984 Query: 705 aagccaattctaggagttt 723 |||||||| |||||||||| Sbjct: 3983 aagccaatactaggagttt 3965 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7660 Number of Sequences: 1807 Number of extensions: 7660 Number of successful extensions: 49 Number of sequences better than 1.0e-20: 1 length of query: 944 length of database: 10,358,551 effective HSP length: 16 effective length of query: 928 effective length of database: 10,329,639 effective search space: 9585904992 effective search space used: 9585904992 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)