BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB09FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1258 1152 0.0
>3x_Contig1258
Length = 6899
Score = 1152 bits (581), Expect = 0.0
Identities = 691/725 (95%), Gaps = 2/725 (0%)
Strand = Plus / Plus
Query: 87 gcatggaagattttttgctaccagtactttccctatcagcatcaacatttgacgatcctg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5464 gcatggaagattttttgctaccagtactttccctatcagcatcaacatttgacgatcctg 5523
Query: 147 gagaacgtaattgtgacatgaaggagtctataaaagatgtccgcggccgacgtggctggt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524 gagaacgtaattgtgacatgaaggagtctataaaagatgtccgcggccgacgtggctggt 5583
Query: 207 gatggttttccggatttgaaggaatttcgctttgtgaggaaacatgagaaggactcggca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5584 gatggttttccggatttgaaggaatttcgctttgtgaggaaacatgagaaggactcggca 5643
Query: 267 tgagagcgctaggccctgattcccttcttgggatattaatgaattgtttattgttttcat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5644 tgagagcgctaggccctgattcccttcttgggatattaatgaattgtttattgttttcat 5703
Query: 327 cttcttcgaacgccctttttgtaagttcctctctttcttctccttcttcctcttcatcaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5704 cttcttcgaacgccctttttgtaagttcctctctttcttctccttcttcctcttcatcaa 5763
Query: 387 ttgctagttctgctctatctccatgagattgacgcagctttctaatttcgatgatatcgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5764 ttgctagttctgctctatctccatgagattgacgcagctttctaatttcgatgatatcgt 5823
Query: 447 tctgtaacgaattttgaatcgagtcagccctcgatatagtcgtagtttcttttgaacctt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5824 tctgtaacgaattttgaatcgagtcagccctcgatatagtcgtagtttcttttgaacctt 5883
Query: 507 tgagttgagccttttaatgtgatactgggagagtttgggttagatgagtgggtttcgtg- 565
|||||||||||| ||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 5884 gaagttgagcctttaaatgtgatactggaggagtttgggttagatgagtgggttcgttga 5943
Query: 566 aagaatgtctattatttgtatttaccgaggagctcagatccgtagcactatattgactgg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5944 aagaatgtctattatttgtatttaccgaggagctcagatccgtagcactatatgaactgt 6003
Query: 626 agcccctatcaacagatgcttgccttgcctctttcaagctagtaaaactggcattttttt 685
|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6004 agccactagcaacagatgcttgccttgcctctttcaagctagtaaaactgtcattttttt 6063
Query: 686 ttcaaggttgttcaatggacgattggatcgttgactttttggtcagttgtcacgtcaaaa 745
| |||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||| |
Sbjct: 6064 tccaaggttggtcaatggacgatt-gatcgttgacttcttggtcagctgtcacgtcaaca 6122
Query: 746 gccattggctgggtaggaactttcaatccccatataattgaatcccgctttagaaaccca 805
||||||| || ||| | |||||||| |||||| | |||||||||| |||||| || |
Sbjct: 6123 gccattgactcggttaggactttcaagtcccataataatgaatcccgcattagaagccaa 6182
Query: 806 atttt 810
|||||
Sbjct: 6183 atttt 6187
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8470
Number of Sequences: 1807
Number of extensions: 8470
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)