BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB09RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig943 498 e-140
3x_Contig1467 357 3e-98
>3x_Contig943
Length = 2708
Score = 498 bits (251), Expect = e-140
Identities = 343/367 (93%), Gaps = 6/367 (1%)
Strand = Plus / Plus
Query: 361 attttattattctaataattncaattgatatactagtcgtaacgaatcaagcaaaaggta 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 7 attttattattctaataatt-caattgatatactagtcgtaacgaatcaagcaaaaggta 65
Query: 421 ttatattagtcctaaaaccactattataataagtctaaagaagagcannagcataatcaa 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 66 ttatattagtcctaaaaccactattataataagtctaaagaagagcaaagcaataatcaa 125
Query: 481 ctagtaaagaaggaagaacaaatatgtcaaaagctgttggtattgatntangtactactt 540
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct: 126 ctagtaaagaaggaagaacaaatatgtcaaaagctgttggtattgatttaggtactac-t 184
Query: 541 tattcgtgtgttgcacatttcaccatcgatcgtgtggaaattattgccaacgatcaaagg 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 185 tattcgtgtgttgcacatttcaccaacgatcgtgtggaaattattgccaacgatcaaggt 244
Query: 601 tatagaacaactccatctttacg-tgccttttacgatacagaaagattgattggtgatgc 659
|||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 245 aatagaacaactccatc-ttacgttgcctttaccgatacagaaagattgattggtgatgc 303
Query: 660 agcaaagaacc-agctgcttttcacccatcaaacactgttttcgatgcttaacgctttga 718
||||||||||| ||||||| | |||||||||||||||||||||||||| | || |||||
Sbjct: 304 agcaaagaaccaagctgctatcaacccatcaaacactgttttcgatgctaagcg-tttga 362
Query: 719 ttggtcg 725
|||||||
Sbjct: 363 ttggtcg 369
>3x_Contig1467
Length = 7717
Score = 357 bits (180), Expect = 3e-98
Identities = 192/196 (97%)
Strand = Plus / Minus
Query: 44 gcttctcggtctttctaagggcgtatagtaagataattgtgcgatgagctgggattatta 103
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 210 gcttctcggtctttctaagggcgaaaagtaagataattgtgcgatgagctgggattatta 151
Query: 104 tagaacgagaccgagaattagttaacatatgggtttgcattcgaattaaattagcaaagt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tagaacgagaccgagaattagttaacatatgggtttgcattcgaattaaattagcaaagt 91
Query: 164 gagtttttcatggttttcaattaggggaagggtatagaagcctatagaatactgtatatt 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 90 gagtttttcatggttttcaattaggggaagggtatagaagcctatagaatactgtagaat 31
Query: 224 aggggagaagttagga 239
||||||||||||||||
Sbjct: 30 aggggagaagttagga 15
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7450
Number of Sequences: 1807
Number of extensions: 7450
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 2
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)