BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZB10FM1.SCF screened BAC_end
         (911 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1315                                                        1021   0.0  

>3x_Contig1315 
          Length = 8846

 Score = 1021 bits (515), Expect = 0.0
 Identities = 529/531 (99%), Gaps = 2/531 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   tacaaagagtcactcttcgatgaactcttgatggaagatcagactttagcacaggaccgc 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1439 tacaaagagtcactcttcgatgaactcttgatggaagatcagactttagcacaggaccgc 1498

                                                                        
Query: 146  gaaaaatgcgtcaaccttttggaaacttatcaaaaagcatcaggtattatcggagacatt 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1499 gaaaaatgcgtcaaccttttggaaacttatcaaaaagcatcaggtattatcggagacatt 1558

                                                                        
Query: 206  ctatagtcctagataggatcctaagttttattttattaagttcaaaatgtaaatagaaat 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1559 ctatagtcctagataggatcctaagttttattttattaagttcaaaatgtaaatagaaat 1618

                                                                        
Query: 266  gaagataatattttgtatacagaaaaaaaaaaacagtattgaatatgcaaagcattaacg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1619 gaagataatattttgtatacagaaaaaaaaaaacagtattgaatatgcaaagcattaacg 1678

                                                                        
Query: 326  tttatccgtgaagctaatttactgatgttggattatccaaatggtcagaatttaacctca 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1679 tttatccgtgaagctaatttactgatgttggattatccaaatggtcagaatttaacctca 1738

                                                                        
Query: 386  gatgtggaagggatgctctttctatcatagaaaacaatatgtaccttataaacgccagat 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1739 gatgtggaagggatgctctttctatcatagaaaacaatatgtaccttataaacgccagat 1798

                                                                        
Query: 446  tcatagaaacgcctttatcaaaaacatcaatataatcaagcagaaaaatattattaaatt 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1799 tcatagaaacgcctttatcaaaaacatcaatataatcaagcagaaaaatattattaaatt 1858

                                                                        
Query: 506  tccaaaatatttcattaatatttttattttcggaacaataaaacatctttaatatttaaa 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1859 tccaaaatatttcattaatatttttattttcggaacaataaaacatctttaatatttaaa 1918

                                                               
Query: 566  ttttagagtagtaatcaaaaaatattctattttattaaataacctagagtt 616
            |||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 1919 ttttagagtagtaatc-aaaaatattctatttta-taaataacctagagtt 1967


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,607
Number of Sequences: 1807
Number of extensions: 14607
Number of successful extensions: 111
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)