BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB10RM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig393 1088 0.0
>3x_Contig393
Length = 1308
Score = 1088 bits (549), Expect = 0.0
Identities = 580/588 (98%), Gaps = 2/588 (0%)
Strand = Plus / Plus
Query: 49 ctagtttaaaaatcggttatcctttaaaagtatatcacgagtctttcagatttaaattca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctagtttaaaaatcggttatcctttaaaagtatatcacgagtctttcagatttaaattca 612
Query: 109 aatttaatcaaagacacttcaaacagtagaaataattgaaactctcttttgtatttcttt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aatttaatcaaagacacttcaaacagtagaaataattgaaactctcttttgtatttcttt 672
Query: 169 ctttaaaaagctgtattaaatttgaattcaccaaaagttcagtaaccaggtaaatgaatt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctttaaaaagctgtattaaatttgaattcaccaaaagttcagtaaccaggtaaatgaatt 732
Query: 229 gttagtaatgtattcgtaaaattaatagaacgaaggaggcaaatgggggaaaaaacacca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gttagtaatgtattcgtaaaattaatagaacgaaggaggcaaatgggggaaaaaacacca 792
Query: 289 ccaatctgatttgtgagatgcgtttgatctttttcttgtctagtctatcaattgttatca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ccaatctgatttgtgagatgcgtttgatctttttcttgtctagtctatcaattgttatca 852
Query: 349 attattctccttcttcaattccttttttttttttcaaaacatgccacgtaccttaattgg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 attattctccttcttcaattccttttttttttttcaaaacatgccacgtaccttaattgg 912
Query: 409 aagaaaaaaatattattctttcgagacgagtgaaactggtatagggaaatatacttgtcg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 aagaaaaaaatattattctttcgagacgagtgaaactggtatagggaaatatacttgtcg 972
Query: 469 ttcgttccttggctctctcttcttcttctaatctaatcaatctcttttcctgtgttgtta 528
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 ttcgttccttgtctctctcttcttcttctaatctaatcaatctcttttcctgtgttgtta 1032
Query: 529 ttccacttgttt-aaccaaaactttaagggctttttatttatttattcaatttnaaattt 587
|||||||||||| ||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct: 1033 ttccacttgtttcaaccaaaacttcaggggctttttatttatttattcaattttcaattt 1092
Query: 588 tcaattttttaaaatcaattttcc-aactttttttttttaaaatttct 634
|||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 1093 tcaattttttcaaatcaattttccaaactttttttttttaaaatttct 1140
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,261
Number of Sequences: 1807
Number of extensions: 22261
Number of successful extensions: 221
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)