BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB11FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1132 0.0
>3x_Contig1698
Length = 21001
Score = 1132 bits (571), Expect = 0.0
Identities = 665/687 (96%), Gaps = 7/687 (1%)
Strand = Plus / Minus
Query: 86 gatccacatttataactaaaaatgggcccgccttcaaatgttttacgttatataaaccga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3658 gatccacatttataactaaaaatgggcccgccttcaaatgttttacgttatataaaccga 3599
Query: 146 cttcatggttctcagggttaccaatggcgaacacaagcccgcttggatcgtaagcaatgc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3598 cttcatggttctcagggttaccaatggcgaacacaagcccgcttggatcgtaagcaatgc 3539
Query: 206 atgtggggactaaacttggtataagggcctgtgccttggagcttctcaaatcccaaagtc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3538 atgtggggactaaacttggtataagggcctgtgccttggagcttctcaaatcccaaagtc 3479
Query: 266 ttaccgattcgtcatacgatgcagacaaaaaagtatcatccaacggggacatttgtatat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3478 ttaccgattcgtcatacgatgcagacaaaaaagtatcatccaacggggacatttgtatat 3419
Query: 326 cgctcactagagcaccatggccctggaaatatctaaggtatgtgtttgtttcaagattca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3418 cgctcactagagcaccatggccctggaaatatctaaggtatgtgtttgtttcaagattca 3359
Query: 386 aatgccttatgtcaaacgatttcatagtggatgaatagatacattctgattgcgcatgtg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3358 aatgccttatgtcaaacgatttcatagtggatgaatagatacattctgattgcgcatgtg 3299
Query: 446 taaactttgcggaatgacatccgtattttttagaagcgatggtattcaaaaacctgcaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3298 taaactttgcggaatgacatccgtattttttagaagcgatggtattcaaaaacctgcaac 3239
Query: 506 ttactgcatcatatagatgcatattatcactagcagttgcagtcaacaagtactggccat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3238 ttactgcatcatatagatgcatattatcactagcagttgcagtcaacaagtactggccat 3179
Query: 566 ggtcatcaaatgtcactggaattatttggtcccaattctttattagaaactctgaaggac 625
|||||||||||||||||| | ||| | |||||||||||||||| ||||||||||||||||
Sbjct: 3178 ggtcatcaaatgtcactgaagtta-taggtcccaattctttatcagaaactctgaaggac 3120
Query: 626 ttcacaggcttcaaattgtaaaagattgctcttggaaatgcctacagtcatatttccttt 685
||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 3119 ttcacaggc-tcaaatcgtagaagattgctcttggaaatgctaacagtcatatttccttt 3061
Query: 686 ttaagttaacttttaaataattacaggaactggtgctaaacccgctggtggtcccgttga 745
| || ||||||||| ||||| ||| |||||| ||||||| |||||||| ||||||||||
Sbjct: 3060 ctcagctaacttttagataatcaca-gaactgttgctaaa-ccgctggt-gtcccgttga 3004
Query: 746 gctttctctttttggtctccaatttgg 772
|| |||||||||| |||||||| ||||
Sbjct: 3003 gc-ttctcttttt-gtctccaaattgg 2979
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7820
Number of Sequences: 1807
Number of extensions: 7820
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)