BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB11RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1466 1350 0.0
>3x_Contig1466
Length = 8735
Score = 1350 bits (681), Expect = 0.0
Identities = 781/805 (97%), Gaps = 7/805 (0%)
Strand = Plus / Minus
Query: 42 gctttggagcatagtcttttatacgtctgacagctctttgacgacgatgcaactgaatat 101
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2923 gctttggagcatagtcttttagacgtctgacagctctttgacgacgatgcaactgaatat 2864
Query: 102 ggtttatattaacgaagaaatcagcttcttcatcaccattgtgtaatagaactttcatat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 ggtttatattaacgaagaaatcagcttcttcatcaccattgtgtaatagaactttcatat 2804
Query: 162 cttcaatttcaaacagatattgagagtttgtgacaatataagcaatgagagagatatatt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 cttcaatttcaaacagatattgagagtttgtgacaatataagcaatgagagagatatatt 2744
Query: 222 cattttgaatctcttcaatgttctttcttaaacctgacctgatatttggtaaaatgatgg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 cattttgaatctcttcaatgttctttcttaaacctgacctgatatttggtaaaatgatgg 2684
Query: 282 ttttcattatgtctatgtatgcacttgcatcttcaactgagagctttgagttcatacaat 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2683 ttttcattatgtctatgtatgcacttgcatcttcaactgagagctttgagttcatacaat 2624
Query: 342 caacaaatcgatttaatgtgtgagaagcattagttctaatagctaattcttgagtgtcat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2623 caacaaatcgatttaatgtgtgagaagcattagttctaatagctaattcttgagtgtcat 2564
Query: 402 tgatgaaaaacaagcatgagtagattacaggcaaccattgcatttctgtgtaagagtcac 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2563 tgatgaaaaacaagcatgagtagattacaggcaaccattgcatttctgtgtaagagtcac 2504
Query: 462 attctttctctgtgaagcgcttgaatgccggtaatcttctttcaaagtcatattctctca 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2503 attctttctctgtgaagcgcttgaatgccggtaatcttctttcaaagtcatattctctca 2444
Query: 522 ttctgctggtcgaatacgaatttaaatcagccaacagcgccccaacagcctcatattcgt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 ttctgctggtcgaatacgaatttaaatcagccaacagcgccccaacagcctcatattcgt 2384
Query: 582 tgaacctcgcaccaatgctcacaaaaatattgttcaatgcctgtctgagatccttatcag 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 tgaacctcgcaccaatgctcacaaaaatattgttcaatgcctgtctgagatccttatcag 2324
Query: 642 aataagatctgtataa-ttagatgcggcaatgttcaagggttcaacttgtgaaaccg-ac 699
|||||||||||||||| |||||||||||||||| ||| |||||||||||||||| || ||
Sbjct: 2323 aataagatctgtataatttagatgcggcaatgtacaatggttcaacttgtgaaaacgaac 2264
Query: 700 agtcggaattatccatcaaagttgataatgtcttcaaaagtttcaccttattctttccca 759
||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct: 2263 agtcgaaattatccatcaaagttgataatgtcttcaaaagtttcacttta-tctttcaca 2205
Query: 760 tgaaattgcaagaaaacttttttccaaggcttggagtcaatgaacccaccaacaatttct 819
|||||| ||| | | ||||| ||| |||| |||||||||||||||||||||| ||||
Sbjct: 2204 gtgaattgcgagagatc-tttttgcaatgctt-gagtcaatgaacccaccaacaa-ttct 2148
Query: 820 ctggtttcgcttatcttcaaaataa 844
|| |||||| |||||||||| ||||
Sbjct: 2147 cttgtttcg-ttatcttcaacataa 2124
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8778
Number of Sequences: 1807
Number of extensions: 8778
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)