BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZB12FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig899 730 0.0
3x_Contig1265 127 4e-29
>3x_Contig899
Length = 3445
Score = 730 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 87 tttcaaacagcaatgacagaaaatggtgtcgcatgttggagtaccttattcttccgacag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttcaaacagcaatgacagaaaatggtgtcgcatgttggagtaccttattcttccgacag 325
Query: 147 aaccgatattacgtgactcaatgaagttactagatttaactttggtttattacaagatca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaccgatattacgtgactcaatgaagttactagatttaactttggtttattacaagatca 265
Query: 207 cgttgaactcaatgggtgagtataagttggagcaaacaattccagctctatgggacatat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgttgaactcaatgggtgagtataagttggagcaaacaattccagctctatgggacatat 205
Query: 267 ggtcgttggaatcaccaatgatactatgcatccacgcatcgtaccatgatgttgataaac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggtcgttggaatcaccaatgatactatgcatccacgcatcgtaccatgatgttgataaac 145
Query: 327 tcactaaaaagaaacccaaacaactagaaagttggctagaaacccagtggtgtgctaagg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tcactaaaaagaaacccaaacaactagaaagttggctagaaacccagtggtgtgctaagg 85
Query: 387 ataaattgatagatacctttgaattgaacgtggagatagtctaaaaaatgatacaatatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ataaattgatagatacctttgaattgaacgtggagatagtctaaaaaatgatacaatatt 25
Query: 447 gtatgtgt 454
||||||||
Sbjct: 24 gtatgtgt 17
>3x_Contig1265
Length = 8324
Score = 127 bits (64), Expect = 4e-29
Identities = 123/136 (90%), Gaps = 5/136 (3%)
Strand = Plus / Minus
Query: 535 attgggatgtaagacgtcatttattgcaag-atcaataagtattagtttatttattctaa 593
||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 8322 attggaatgtaggacgtcatttat-gcaaggatcaataagtattagtttatttattctaa 8264
Query: 594 atgagttttttgccatttc-gatgccaatttatcgacgggttcatcctttacaaattggg 652
||||| ||||||||| ||| |||||||||| |||||||| ||||||||| ||||||| |
Sbjct: 8263 atgag-tttttgccaattcggatgccaattcatcgacggtttcatccttaacaaatt-gt 8206
Query: 653 gtgggttcccacacgt 668
|| |||||||||||||
Sbjct: 8205 gttggttcccacacgt 8190
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9237
Number of Sequences: 1807
Number of extensions: 9237
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 2
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)