BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC01FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 965 0.0
>3x_Contig1319
Length = 7600
Score = 965 bits (487), Expect = 0.0
Identities = 527/535 (98%), Gaps = 4/535 (0%)
Strand = Plus / Plus
Query: 86 taccgattcttatattggtgttaatcggttggttttgttcgttccccttctttctagtta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 taccgattcttatattggtgttaatcggttggttttgttcgttccccttctttctagtta 1612
Query: 146 tataagtttgaagtcaattctatcgtctcatagagaagatctctcactattccttacgtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 tataagtttgaagtcaattctatcgtctcatagagaagatctctcactattccttacgtg 1672
Query: 206 tttctaccactttatatcgttcttagcttctttgtaaaagcaaatcaaccaagaaactca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 tttctaccactttatatcgttcttagcttctttgtaaaagcaaatcaaccaagaaactca 1732
Query: 266 tgtgatacacagaattttgtaaacactagctcctttcaatgggacaaagttcgatgcttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1733 tgtgatacacagaattttgtaaacactagctcctttcaatgggacaaagttcgatgcttt 1792
Query: 326 gaggtttcattaacttctcatcagtttactcttccaggttcattgtttaccaattaaact 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1793 gaggtttcattaacttctcatcagtttactcttccaggttcattgtttaccaattaaact 1852
Query: 386 aattgggtaattatctatcatgtgacttgtttgatcatgtgacttgaaaagcaagaggtt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1853 aattgggtaattatctatcatgtgacttgtttgatcatgtgacttgaaaagcaagaggtt 1912
Query: 446 tacttgggacctttcttgtagtcccttgagaaaacatggtgtcaatg-gctgcctcaacc 504
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1913 tacttgggacctttcttgtagtcccttgagaaaacatggtgtcaatgtgctgcctcaacc 1972
Query: 505 ctcaa-gatatgatgttggatcgtagtaagtggtcctttggtagctcatgctcttggttt 563
||||| || |||||||| ||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 1973 ctcaatgaaatgatgtttgatcgtagtaagt-gttctttggtagctcatgctctt-gttt 2030
Query: 564 tttctatgtggggtctgcttccttaacgaatctttgagtttaaatatagcagatc 618
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2031 tttctatgtgtggtctgcttccttaacgaatctttgagtttaaatatagcagatc 2085
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5695
Number of Sequences: 1807
Number of extensions: 5695
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)