BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZC01RM1.SCF screened BAC_end (946 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1310 1411 0.0 >3x_Contig1310 Length = 7790 Score = 1411 bits (712), Expect = 0.0 Identities = 786/804 (97%), Gaps = 5/804 (0%) Strand = Plus / Minus Query: 50 ctttaattcaaccgcataattatatttcagcttatctggaactgttaagatttttgagat 109 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 6215 ctttaattcaaccgcataattataagtcagcttatctggaactgttaagatttttgagat 6156 Query: 110 ggagattcattaattcagataaaccttcctcgggtaaatctcagagggatggccccgagc 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6155 ggagattcattaattcagataaaccttcctcgggtaaatctcagagggatggccccgagc 6096 Query: 170 aattgcaaaatatagcccactctattaaaacacattatgcaccaatattcgttacatcta 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 6095 aattgcaaaatatagcccactctattaaaacacattatgcaccaatattcgttaca-cta 6037 Query: 230 tctaatagtttaattgctcaagatttaaaattacaagaaattattctccaaagggcattg 289 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6036 actaatagtttaattgctcaagatttaaaattacaagaaattattctccaaagggcattg 5977 Query: 290 ttagagtatgaaagcatggccaaacttgtaaattgtaccccaatgtgtatatggagaagg 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5976 ttagagtatgaaagcatggccaaacttgtaaattgtaccccaatgtgtatatggagaagg 5917 Query: 350 tcaggggagatatgctttgcttctaatgaatttatatcccttaccgggttcaacaaaaag 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5916 tcaggggagatatgctttgcttctaatgaatttatatcccttaccgggttcaacaaaaag 5857 Query: 410 gagattttaaacaaacgaaagtttatcatggaattcatggacaatgaaagcatagtagat 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5856 gagattttaaacaaacgaaagtttatcatggaattcatggacaatgaaagcatagtagat 5797 Query: 470 tactatgatatattccatgagtatttggcatttggttcaactcaaagtgggcccttcaat 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5796 tactatgatatattccatgagtatttggcatttggttcaactcaaagtgggcccttcaat 5737 Query: 530 tcatcgaccggaacttctgatggtcaggctatttttagcgaatgtaaccttttgttaaag 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5736 tcatcgaccggaacttctgatggtcaggctatttttagcgaatgtaaccttttgttaaag 5677 Query: 590 aatggatgctatctacggtgtgcatgtatttggacagttaaaagagatgcatttaatatt 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5676 aatggatgctatctacggtgtgcatgtatttggacagttaaaagagatgcatttaatatt 5617 Query: 650 ccaatgtttataatgggccagttctttacaattttcgatattgaatgatagtcgaatttg 709 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 5616 ccaatgttaataatgggccagttcttaccaattttcgatattgaatgatagtcgaattgt 5557 Query: 710 ttcaaccgtaacgcttgctcgatttgt-actatatataaattttccaac-catttattta 767 | ||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| Sbjct: 5556 tccaaccgtaacgcttgctcgatatgtaactatatataaattttccaacacatttattta 5497 Query: 768 ttgattatggaaccattggcggtccgggcagacaaatttcacaaaattgcccaaaatgct 827 |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 5496 ttgattatggaaacatcggcggtccgggcagacaaatttcacaaaattg-ccaaaatgct 5438 Query: 828 atcttgaagggatgggtctatcat 851 ||||||||| ||| |||||||||| Sbjct: 5437 atcttgaagtgat-ggtctatcat 5415 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7778 Number of Sequences: 1807 Number of extensions: 7778 Number of successful extensions: 56 Number of sequences better than 1.0e-20: 1 length of query: 946 length of database: 10,358,551 effective HSP length: 16 effective length of query: 930 effective length of database: 10,329,639 effective search space: 9606564270 effective search space used: 9606564270 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)