BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZC01RM1.SCF screened BAC_end
         (946 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1310                                                        1411   0.0  

>3x_Contig1310 
          Length = 7790

 Score = 1411 bits (712), Expect = 0.0
 Identities = 786/804 (97%), Gaps = 5/804 (0%)
 Strand = Plus / Minus

                                                                        
Query: 50   ctttaattcaaccgcataattatatttcagcttatctggaactgttaagatttttgagat 109
            ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 6215 ctttaattcaaccgcataattataagtcagcttatctggaactgttaagatttttgagat 6156

                                                                        
Query: 110  ggagattcattaattcagataaaccttcctcgggtaaatctcagagggatggccccgagc 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6155 ggagattcattaattcagataaaccttcctcgggtaaatctcagagggatggccccgagc 6096

                                                                        
Query: 170  aattgcaaaatatagcccactctattaaaacacattatgcaccaatattcgttacatcta 229
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6095 aattgcaaaatatagcccactctattaaaacacattatgcaccaatattcgttaca-cta 6037

                                                                        
Query: 230  tctaatagtttaattgctcaagatttaaaattacaagaaattattctccaaagggcattg 289
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6036 actaatagtttaattgctcaagatttaaaattacaagaaattattctccaaagggcattg 5977

                                                                        
Query: 290  ttagagtatgaaagcatggccaaacttgtaaattgtaccccaatgtgtatatggagaagg 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5976 ttagagtatgaaagcatggccaaacttgtaaattgtaccccaatgtgtatatggagaagg 5917

                                                                        
Query: 350  tcaggggagatatgctttgcttctaatgaatttatatcccttaccgggttcaacaaaaag 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5916 tcaggggagatatgctttgcttctaatgaatttatatcccttaccgggttcaacaaaaag 5857

                                                                        
Query: 410  gagattttaaacaaacgaaagtttatcatggaattcatggacaatgaaagcatagtagat 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5856 gagattttaaacaaacgaaagtttatcatggaattcatggacaatgaaagcatagtagat 5797

                                                                        
Query: 470  tactatgatatattccatgagtatttggcatttggttcaactcaaagtgggcccttcaat 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5796 tactatgatatattccatgagtatttggcatttggttcaactcaaagtgggcccttcaat 5737

                                                                        
Query: 530  tcatcgaccggaacttctgatggtcaggctatttttagcgaatgtaaccttttgttaaag 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5736 tcatcgaccggaacttctgatggtcaggctatttttagcgaatgtaaccttttgttaaag 5677

                                                                        
Query: 590  aatggatgctatctacggtgtgcatgtatttggacagttaaaagagatgcatttaatatt 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5676 aatggatgctatctacggtgtgcatgtatttggacagttaaaagagatgcatttaatatt 5617

                                                                        
Query: 650  ccaatgtttataatgggccagttctttacaattttcgatattgaatgatagtcgaatttg 709
            |||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||  
Sbjct: 5616 ccaatgttaataatgggccagttcttaccaattttcgatattgaatgatagtcgaattgt 5557

                                                                        
Query: 710  ttcaaccgtaacgcttgctcgatttgt-actatatataaattttccaac-catttattta 767
            | ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||
Sbjct: 5556 tccaaccgtaacgcttgctcgatatgtaactatatataaattttccaacacatttattta 5497

                                                                        
Query: 768  ttgattatggaaccattggcggtccgggcagacaaatttcacaaaattgcccaaaatgct 827
            |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5496 ttgattatggaaacatcggcggtccgggcagacaaatttcacaaaattg-ccaaaatgct 5438

                                    
Query: 828  atcttgaagggatgggtctatcat 851
            ||||||||| ||| ||||||||||
Sbjct: 5437 atcttgaagtgat-ggtctatcat 5415


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7778
Number of Sequences: 1807
Number of extensions: 7778
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)