BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZC02FM1.SCF screened BAC_end (848 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1516 486 e-137 >3x_Contig1516 Length = 8750 Score = 486 bits (245), Expect = e-137 Identities = 252/253 (99%), Gaps = 1/253 (0%) Strand = Plus / Plus Query: 82 tggaaatcttccgtactaagggtgctttggaataaagttcttttgtttagtaccattatc 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5504 tggaaatcttccgtactaagggtgctttggaataaagttcttttgtttagtaccattatc 5563 Query: 142 ccaaacaatttaacttataattttctatatacaatttaaataccagaacgcatgaaatga 201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5564 ccaaacaatttaacttataattttctatatacaatttaaataccagaacgcatgaaatga 5623 Query: 202 tcaaatgaagacatctgaaccattagttacaaaatgattggcagggatccgctgtgcatc 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5624 tcaaatgaagacatctgaaccattagttacaaaatgattggcagggatccgctgtgcatc 5683 Query: 262 ggatacgttcaccagtgttatcctttggacgctaccgaggacttacctgttatcgaactg 321 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 5684 ggatacgttcaccagtgttatcc-ttggacgctaccgaggacttacctgttatcgaactg 5742 Query: 322 catttgtcttttt 334 ||||||||||||| Sbjct: 5743 catttgtcttttt 5755 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 40,144 Number of Sequences: 1807 Number of extensions: 40144 Number of successful extensions: 1112 Number of sequences better than 1.0e-20: 1 length of query: 848 length of database: 10,358,551 effective HSP length: 16 effective length of query: 832 effective length of database: 10,329,639 effective search space: 8594259648 effective search space used: 8594259648 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)