BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZC02RM1.SCF screened BAC_end
         (918 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1749                                                        1296   0.0  

>3x_Contig1749 
          Length = 22923

 Score = 1296 bits (654), Expect = 0.0
 Identities = 787/820 (95%), Gaps = 9/820 (1%)
 Strand = Plus / Plus

                                                                        
Query: 43   gcttgtcctctatgttgctcaacatcttctctttcagctgcaacagatggctctgcatta 102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593  gcttgtcctctatgttgctcaacatcttctctttcagctgcaacagatggctctgcatta 652

                                                                        
Query: 103  tcagaatcactttcattatcaggggttaagtctgctaccgttgcttcgtcatcatatctt 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 653  tcagaatcactttcattatcaggggttaagtctgctaccgttgcttcgtcatcctatctt 712

                                                                        
Query: 163  actcttttctgaccagctctagtgatctctctcaactgttttctaccagattttggacca 222
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 713  actcttttctgaccagctctagtgatcactctcaactgttttctaccagattttggacca 772

                                                                        
Query: 223  gctctgattttactcatgtttgaggattcctttaccaaataaatgacacttttctactac 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773  gctctgattttactcatgtttgaggattcctttaccaaataaatgacacttttctactac 832

                                                                        
Query: 283  tccagcaataaccaaatacaattaatatgatgtcaatttaatatactgctcatctcatgt 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  tccagcaataaccaaatacaattaatatgatgtcaatttaatatactgctcatctcatgt 892

                                                                        
Query: 343  catctcatcgcatcttataatcttagatgctcaatttttcatccgtgtttaatgatctca 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  catctcatcgcatcttataatcttagatgctcaatttttcatccgtgtttaatgatctca 952

                                                                        
Query: 403  tcaggtccaggtacttgaaaagaagtgtcgaccccttcctaccgtaaagtcatgtcacag 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  tcaggtccaggtacttgaaaagaagtgtcgaccccttcctaccgtaaagtcatgtcacag 1012

                                                                        
Query: 463  cagacctgaaacacctcaaagattacgtctaccttgagaagcgattaaacaagttcaaag 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 cagacctgaaacacctcaaagattacgtctaccttgagaagcgattaaacaagttcaaag 1072

                                                                        
Query: 523  tagtgtgctcgtcatactgtttacctttttggtacgttccattccttttactactgcgcc 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 tagtgtgctcgtcatactgtttacctttttggtacgttccattccttttactactgcgcc 1132

                                                                        
Query: 583  tgtaaactgactgttttcataaaccttatat-atacaaaccaaaaaaataatgttacata 641
            ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 1133 tgtaaactgactgttttcataaa-cttatataatacaaacaaaaaaaataatgttacata 1191

                                                                        
Query: 642  gaattacgatgggaaatcttcaagcanaccagaagacgaaagagtcaagatagatagctt 701
            |||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||  ||||
Sbjct: 1192 gaattacgat-ggaaatcttcaagcaaaccagaagacgaaggagtcaagaaagaaggctt 1250

                                                                        
Query: 702  gagcccattcac-atagcccgtcactgtgcaaatttc-acgtgttccagatgccanctat 759
            ||| ||||  || |||||||||||||||||||| ||| |||| | | ||||||||   ||
Sbjct: 1251 gag-ccatcaacaatagcccgtcactgtgcaaaattcaacgtttccaagatgccactaat 1309

                                                                        
Query: 760  aaagaagagtgtgcttcaaactctgcggaatattctcacgaacatggtatctatttctcg 819
            |||||||||||||||||||||||||||||   |||||||| |||  ||||||||||||||
Sbjct: 1310 aaagaagagtgtgcttcaaactctgcggatatttctcacg-acaatgtatctatttctcg 1368

                                                    
Query: 820  ggcctgattaccatttccgataagtttccaatttggtggg 859
             | |||||||||| ||||||||||||||||| ||||||||
Sbjct: 1369 tg-ctgattacca-ttccgataagtttccaagttggtggg 1406


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6683
Number of Sequences: 1807
Number of extensions: 6683
Number of successful extensions: 146
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)