BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC04FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1091 813 0.0
3x_Contig1083 141 3e-33
>3x_Contig1091
Length = 4701
Score = 813 bits (410), Expect = 0.0
Identities = 420/422 (99%), Gaps = 1/422 (0%)
Strand = Plus / Minus
Query: 87 tgatttgggagagttcaaaagttgtgggaggaagttagttaggatagagaaaccacactc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgatttgggagagttcaaaagttgtgggaggaagttagttaggatagagaaaccacactc 364
Query: 147 acagcaacagggagcatgaaatagataaaaaaaaaaactttatcttccagtcactactaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 acagcaacagggagcatgaaatagataaaaaaaaaaactttatcttccagtcactactaa 304
Query: 207 ctagtaaatgctctgaacgattatgtgcgaaggctgaaacttgcttgcttagtttgctaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctagtaaatgctctgaacgattatgtgcgaaggctgaaacttgcttgcttagtttgctaa 244
Query: 267 ctcacttaccgtcttttactaacgaagtaaaaattttctaaatttctacaatttcaagag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctcacttaccgtcttttactaacgaagtaaaaattttctaaatttctacaatttcaagag 184
Query: 327 aaataaaaaaaatgcaagtttttacttgctaatacttattaaatttctcacacgccagcc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 aaataaaaaaaatgcaagtttttacttgctaatacttattaaatttctcacacgccagcc 124
Query: 387 gtttggttcaagcctggaactgccgtgtaatatcgatactaactacgcttctgtacccaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gtttggttcaagcctggaactgccgtgtaatatcgatactaactacgcttctgtacccaa 64
Query: 447 aaaacactgcttgatacttccatccattgttttcacattacatttccgaaccttgaggaa 506
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 63 aaaacactgcttgatacttccatccattgttttcacattacatttcggaa-cttgaggaa 5
Query: 507 tt 508
||
Sbjct: 4 tt 3
>3x_Contig1083
Length = 2993
Score = 141 bits (71), Expect = 3e-33
Identities = 125/139 (89%), Gaps = 3/139 (2%)
Strand = Plus / Plus
Query: 630 ctttctctgttcttcattgggtgccggcactactaggtggtggcttcataatattttgca 689
|||||||||||||||||||| || || ||||||||| || || |||||||||| ||||||
Sbjct: 7 ctttctctgttcttcattggttgtcgccactactagttgttg-cttcataataatttgca 65
Query: 690 aactttgacttgctcatcttctgggaattgtattgggaatacccccctagaaaatttgga 749
|||| |||| |||||||||||| ||||||||||||||||| | ||||||||||||||||
Sbjct: 66 gacttcgactcgctcatcttctgtgaattgtattgggaata-caccctagaaaatttgga 124
Query: 750 agaaaaaaggattttcttt 768
|| ||||||||||||||||
Sbjct: 125 ag-aaaaaggattttcttt 142
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,404
Number of Sequences: 1807
Number of extensions: 14404
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 2
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)