BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC04RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1374 0.0
>3x_Contig1786
Length = 33838
Score = 1374 bits (693), Expect = 0.0
Identities = 821/856 (95%), Gaps = 6/856 (0%)
Strand = Plus / Minus
Query: 44 ctttgctctgactctgcc-cagctcgcttcgtcttttcatagcttctagaatcttgcaaa 102
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5536 ctttgctctgactctgccacagctcgcttcgtcttttcatagcttctagaatcttgcaaa 5477
Query: 103 ggctctaatctagccaagtaccgctttaacgtatcttccaaaggagggattggcaacctg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5476 ggctctaatctagccaagtaccgctttaacgtatcttccaaaggagggattggcaacctg 5417
Query: 163 ggcaaaacttcctggttcgtatctttaatagatggcataacaatatgttaacgtccttag 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5416 ggcaaaacttcctggttcgtatctttaatagatggcataacaatatgttaacgtccttag 5357
Query: 223 ttgatggctcttagcactttactcctgtgaatggtatccacaaatagcaagactttaggg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5356 ttgatggctcttagcactttactcctgtgaatggtatccacaaatagcaagactttaggg 5297
Query: 283 agaggaaattttaatcgatactccgaacagtcagctatttatatatacgtatataactta 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5296 agaggaaattttaatcgatactccgaacagtcagctatttatatatacgtatataactta 5237
Query: 343 tgagttctatccttcattgcaaatcatcaatacatatgtcctttaatcatttgagttagt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5236 tgagttctatccttcattgcaaatcatcaatacatatgtcctttaatcatttgagttagt 5177
Query: 403 catgcaatatttgagaattagcgcccttctcttaactcatccctactacgatttgttttc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5176 catgcaatatttgagaattagcgcccttctcttaactcatccctactacgatttgttttc 5117
Query: 463 tttttccgaaacatccggacagtcatccatcatcgaccttcaccaacttttctccattta 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5116 tttttccgaaacatccggacagtcatccatcatcgaccttcaccaacttttctccattta 5057
Query: 523 accaaataaaggttttgatgatcagctntatgcgaaaaaacctttgaatgaccacaaacc 582
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5056 accaaataaaggttttgatgatcagctttatgcgaaaaaacctttgaatgaccacaaaca 4997
Query: 583 agggaagcagaataaaacggagtagtcagaacagaccgtgcacttagttttccgtttagg 642
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 4996 agggaagcagaataaaacggagtagtcagaacagaccgtgcacttag-tttccggttagg 4938
Query: 643 gtaatcacaagatagggatactggggtatgcagacagagacctttcgtattattattagt 702
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4937 gtaatcacaagatagggatactgggtaatgcagacagagacctttcgtattattattagt 4878
Query: 703 ggcagttagtagaggaaccggcgaacacaccgagagagagattccgagaaagagatat-c 761
|||||| ||||||| ||| | |||||||| ||||||||||| | ||||||||||||| |
Sbjct: 4877 ggcagtaagtagagaaacggcagaacacacagagagagagatacagagaaagagatatac 4818
Query: 762 ttgatagatctgggaatgggatattcaata-accatgggacctattcgct-aaacaagtg 819
| ||||||||||||||||| |||||||| |||||| |||||| |||| |||||||||
Sbjct: 4817 tagatagatctgggaatggataattcaatagcccatggaacctatgcgctaaaacaagtg 4758
Query: 820 attggtccgggggcttatggtgttgtgttcagagcatggaaaagaggcccgattaaacc- 878
||||||| ||||||||||||||||||| ||||||| |||||||||| ||| ||||||
Sbjct: 4757 attggtcgcggggcttatggtgttgtgtacagagcagtgaaaagaggcacgaataaacca 4698
Query: 879 tttgcgatttaacaga 894
| ||||||| ||||||
Sbjct: 4697 tgtgcgattaaacaga 4682
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6178
Number of Sequences: 1807
Number of extensions: 6178
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)