BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC05FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 1294 0.0
3x_Contig1493 137 4e-32
>3x_Contig1571
Length = 13536
Score = 1294 bits (653), Expect = 0.0
Identities = 760/789 (96%), Gaps = 5/789 (0%)
Strand = Plus / Plus
Query: 86 ccaccactgaatatgaaaccattactttgaccttatacaagaacgaccactggttcacta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12027 ccaccactgaatatgaaaccattactttgaccttatacaagaacgaccactggttcacta 12086
Query: 146 agaccgtcacccaaccagttggttacgtttacgccggtgaaactgccgctcaaacctcat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12087 agaccgtcacccaaccagttggttacgtttacgccggtgaaactgccgctcaaacctcat 12146
Query: 206 ccgctgaagaaacctcatctgccgaagaaacctcatctgccgctgaagagaattctacca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12147 ccgctgaagaaacctcatctgccgaagaaacctcatctgccgctgaagagaattctacca 12206
Query: 266 ctgaatacgaaactaagactctaactttgtccaagaacggtcactggttcactaagactg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12207 ctgaatacgaaactaagactctaactttgtccaagaacggtcactggttcactaagactg 12266
Query: 326 tcacccagccggttggtttcgtctggaccggtgaagcaactacctacactggtgttgctc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12267 tcacccagccggttggtttcgtctggaccggtgaagcaactacctacactggtgttgctc 12326
Query: 386 catgggctagtagttctgctgaagaagcttctaccactcttgatgccgatgaacttgaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12327 catgggctagtagttctgctgaagaagcttctaccactcttgatgccgatgaacttgaaa 12386
Query: 446 ctgtcactttgactttgtctaagaatggtcactggttcactaagaccgtcactcaaacta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12387 ctgtcactttgactttgtctaagaatggtcactggttcactaagaccgtcactcaaacta 12446
Query: 506 agggtttcgtctggaccggtgaaccatctagatcggctgccacaacctccgctgaagata 565
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 12447 agggtttcgtctggaccggtgaaccatctagatcggctgccacaacctccgctgaagaaa 12506
Query: 566 cttcttctactgaagaagcctctaccactgaatacgaaactaagactctaactttgtcca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12507 cttcttctactgaagaagcctctaccactgaatacgaaactaagactctaactttgtcca 12566
Query: 626 agatcggtcactggttcactaagactgtcacccagcccgttggtttccgtctggaccggt 685
||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 12567 agaacggtcactggttcactaagactgtcacccagccggttggttt-cgtctggaccggt 12625
Query: 686 gaagcaactacctacactggtgttgctccatgggctagtatttctgctgaaga-gcctct 744
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 12626 gaagcaactacctacactggtgttgctccatgggctagtagttctgctgaagaggcctct 12685
Query: 745 tcaactgaag-aggctttaccacttttgatgcc-aagaaactggaactggcactttgact 802
|||||||||| || || ||||||| |||||||| | ||| || ||||| ||||||||||
Sbjct: 12686 tcaactgaagaagcctctaccactcttgatgccgatgaacttgaaactgtcactttgact 12745
Query: 803 ttgcttaag-atgggcattggttcactaagaaccgcccttaaactaaggtttttgtttgg 861
||| |||| |||| |||||||||||||||| | | || ||||||||| ||| || |||
Sbjct: 12746 ttgtctaagaatggtcattggttcactaagaccgtcactcaaactaagggtttcgtatgg 12805
Query: 862 acgggcgaa 870
|| ||||||
Sbjct: 12806 accggcgaa 12814
Score = 238 bits (120), Expect = 2e-62
Identities = 132/136 (97%)
Strand = Plus / Plus
Query: 404 ctgaagaagcttctaccactcttgatgccgatgaacttgaaactgtcactttgactttgt 463
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12690 ctgaagaagcctctaccactcttgatgccgatgaacttgaaactgtcactttgactttgt 12749
Query: 464 ctaagaatggtcactggttcactaagaccgtcactcaaactaagggtttcgtctggaccg 523
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12750 ctaagaatggtcattggttcactaagaccgtcactcaaactaagggtttcgtatggaccg 12809
Query: 524 gtgaaccatctagatc 539
| ||||||||||||||
Sbjct: 12810 gcgaaccatctagatc 12825
>3x_Contig1493
Length = 12243
Score = 137 bits (69), Expect = 4e-32
Identities = 117/133 (87%)
Strand = Plus / Plus
Query: 262 accactgaatacgaaactaagactctaactttgtccaagaacggtcactggttcactaag 321
||||||||||||||||| ||| | |||||||| |||||||||||||||||||| |||
Sbjct: 10901 accactgaatacgaaaccgtcactttgactttgtctaagaacggtcactggttcaccaag 10960
Query: 322 actgtcacccagccggttggtttcgtctggaccggtgaagcaactacctacactggtgtt 381
|| |||||||| | || |||||||||||||| |||||||| || |||||||||||||||
Sbjct: 10961 accgtcacccaagcagtcggtttcgtctggactggtgaagctaccacctacactggtgtt 11020
Query: 382 gctccatgggcta 394
|||||||||||||
Sbjct: 11021 gctccatgggcta 11033
Score = 117 bits (59), Expect = 4e-26
Identities = 123/143 (86%), Gaps = 1/143 (0%)
Strand = Plus / Plus
Query: 580 gaagcctctaccactgaatacgaaactaagactctaactttgtccaagatcggtcactgg 639
||||| || ||||||||||||||||| ||| | |||||||| |||| ||||||||||
Sbjct: 10892 gaagcttccaccactgaatacgaaaccgtcactttgactttgtctaagaacggtcactgg 10951
Query: 640 ttcactaagactgtcacccagcccgttggtttccgtctggaccggtgaagcaactaccta 699
||||| ||||| |||||||| | || |||||| |||||||| |||||||| || |||||
Sbjct: 10952 ttcaccaagaccgtcacccaagcagtcggtttc-gtctggactggtgaagctaccaccta 11010
Query: 700 cactggtgttgctccatgggcta 722
|||||||||||||||||||||||
Sbjct: 11011 cactggtgttgctccatgggcta 11033
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4896
Number of Sequences: 1807
Number of extensions: 4896
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 2
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)