BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC05RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig974 1392 0.0
>3x_Contig974
Length = 4780
Score = 1392 bits (702), Expect = 0.0
Identities = 748/761 (98%), Gaps = 2/761 (0%)
Strand = Plus / Minus
Query: 48 acgttatcggtgaacaaggtaaatatactccagttggtgcttacttggcgattgatgaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4746 acgttatcggtgaacaaggtaaatatactccagttggtgcttacttggcgattgatgaaa 4687
Query: 108 ttatcaacattgccaagtcccatggtgtgaactttatccatcctggttacgggttcctat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4686 ttatcaacattgccaagtcccatggtgtgaactttatccatcctggttacgggttcctat 4627
Query: 168 cagaaaactctgaattcgctgaaaaagttgcagcttctggtatcacttgggttggtcctc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4626 cagaaaactctgaattcgctgaaaaagttgcagcttctggtatcacttgggttggtcctc 4567
Query: 228 cagctgctgttatcgattccgttggtgacaaagtttcagccagaaacttggctgaaaagg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4566 cagctgctgttatcgattccgttggtgacaaagtttcagccagaaacttggctgaaaagg 4507
Query: 288 ctaacgttccagtggttccaggtactccaggtccaattgagactgtcgaagaagcacagg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4506 ctaacgttccagtggttccaggtactccaggtccaattgagactgtcgaagaagcacagg 4447
Query: 348 ccttcgttgataaatacggattcccagtcatcattaaggccgcctttggtggtggtggtc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4446 ccttcgttgataaatacggattcccagtcatcattaaggccgcctttggtggtggtggtc 4387
Query: 408 gtggtatgagagttgtccgtgaaggtgatgatatcagtgacgctttccaacgtgccaaat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4386 gtggtatgagagttgtccgtgaaggtgatgatatcagtgacgctttccaacgtgccaaat 4327
Query: 468 ctgaagctatcactgcttttggtaacggtacttgtttcattgaaagattcttggacaagc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4326 ctgaagctatcactgcttttggtaacggtacttgtttcattgaaagattcttggacaagc 4267
Query: 528 caaagcatatcgaagttcaattgttggctgataactacggtaacgttgttcatctgttcg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4266 caaagcatatcgaagttcaattgttggctgataactacggtaacgttgttcatctgttcg 4207
Query: 588 aaagagattgttccgttcaaagaagacatcaaaaggttgtcgaagttgccccagccaaaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4206 aaagagattgttccgttcaaagaagacatcaaaaggttgtcgaagttgccccagccaaaa 4147
Query: 648 ctctacctgaagaagtgcgtgacgctatctttactgatgcggtc-aattagctaaagaag 706
||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||
Sbjct: 4146 ctctacctgaagaagtgcgtgacgctatcttaactgatgcggtcaaattagctaaggaag 4087
Query: 707 ctggnttcagaaacgctggtaccgctgaattcttagtcgat-accaaaacagactttact 765
|||| | |||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 4086 ctggttacagaaacgctggtaccgctgaattcttagtcgataaccaaaacagacattact 4027
Query: 766 ttatcgaattaaccccaggatttcaagtcgaacattcaatt 806
|||||||| | | |||| || |||||||||||||| |||||
Sbjct: 4026 ttatcgaaattaacccaagaattcaagtcgaacatacaatt 3986
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6461
Number of Sequences: 1807
Number of extensions: 6461
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)