BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC06FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1547 1176 0.0
>3x_Contig1547
Length = 9547
Score = 1176 bits (593), Expect = 0.0
Identities = 694/720 (96%), Gaps = 6/720 (0%)
Strand = Plus / Minus
Query: 87 caacggtttccatattatgtgcgtagacgtcaagtcccgagagagccatgactttaacca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 caacggtttccatattatgtgcgtagacgtcaagtcccgagagagccatgactttaacca 2420
Query: 147 tttctaagtcacctctgaaatcaccagataatgtttcaaccaaaatattgggcgcctttt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 tttctaagtcacctctgaaatcaccagataatgtttcaaccaaaatattgggcgcctttt 2360
Query: 207 gctttatcttctgaacagtttctgccaaatggtatgcaccaccatccacgagatcatctc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 gctttatcttctgaacagtttctgccaaatggtatgcaccaccatccacgagatcatctc 2300
Query: 267 tatcaacggtagttaacacgacgtaacccagaccccatctcgaaatagcttctgcagtat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2299 tatcaacggtagttaacacgacgtaacccagaccccatctcgaaatagcttctgcagtat 2240
Query: 327 tctctggttctgtcggatccggtgctgaaggtttccgattagtcttcacggaacagaatc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2239 tctctggttctgtcggatccggtgctgaaggtttccgattagtcttcacggaacagaatc 2180
Query: 387 tacaacctctggtacaagtatcacctaacaacatgattgttgctgttgcctttgacttat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2179 tacaacctctggtacaagtatcacctaacaacatgattgttgctgttgcctttgacttat 2120
Query: 447 caccaccaccccaacattctccgatgttgggacacttagcttcctcacaaacggtactta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2119 caccaccaccccaacattctccgatgttgggacacttagcttcctcacaaacggtactta 2060
Query: 507 gtttcaactccttcacgtcgtttttcaacttatggaaatttgaacccttggcaatcggca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2059 gtttcaactccttcacgtcgtttttcaacttatggaaatttgaacccttggcaatcggca 2000
Query: 567 ctttttaccaagttggtagcctttgcacttnctcactgttctgccttgccttttctaacg 626
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1999 cttttaaccaagttggtagcctttgcacttcttcactgttctgccttgccttttctaacg 1940
Query: 627 gatctaaagtaaatttttgtgcattaccgttaacaaattcttc-aaagagggccttttat 685
||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||||
Sbjct: 1939 gatctaaggtaaatttttgtgcattaccgttaacaaaatcttcaaaagagggccctttat 1880
Query: 686 tcaac-tatctg-gaaatgagtaagcttcctttcttct-gaaacagatgcctgggtagaa 742
||||| |||||| |||||||||| ||||| ||||||| |||||||||| |||||||||
Sbjct: 1879 tcaacttatctgtgaaatgagtagtcttcc-ttcttctagaaacagatggctgggtagac 1821
Query: 743 cttacccaattttttgtattgacccg-ttttgttccgaaccaatcccgggttttagcatt 801
|||||| | ||| |||| ||| ||| |||||| |||||| ||| || ||||||||||||
Sbjct: 1820 cttaccacagtttctgtaatgaaccgtttttgtaccgaacgaattcctggttttagcatt 1761
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5859
Number of Sequences: 1807
Number of extensions: 5859
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)