BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC06RM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1140 950 0.0
>3x_Contig1140
Length = 5352
Score = 950 bits (479), Expect = 0.0
Identities = 486/487 (99%), Gaps = 1/487 (0%)
Strand = Plus / Minus
Query: 50 atgccaagaccttgccaccaaagaagcccgctacttcgttcggttcgttcttgaaggaga 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atgccaagaccttgccaccaaagaagcccgctacttcgttcggttcgttcttgaaggaga 429
Query: 110 agagtcctcaattgagaactgaaaatccagggttgtcccaaattgagattttgaaactgg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agagtcctcaattgagaactgaaaatccagggttgtcccaaattgagattttgaaactgg 369
Query: 170 caagttctaaatggaaatctttggatgcctccactaaggaacaataccagaataaataca 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caagttctaaatggaaatctttggatgcctccactaaggaacaataccagaataaataca 309
Query: 230 gagaagatcttgctgaatacagaaaagttatggggcaacaatctgcttaatggaattaac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gagaagatcttgctgaatacagaaaagttatggggcaacaatctgcttaatggaattaac 249
Query: 290 gattttattccatgtagttctcaaattatgggtttgatttggtaatcgttcatcctctgg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gattttattccatgtagttctcaaattatgggtttgatttggtaatcgttcatcctctgg 189
Query: 350 aatcaacaaaaca-gggtattgacagtatacttcttctcccaagtaattctggagagaga 408
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aatcaacaaaacaggggtattgacagtatacttcttctcccaagtaattctggagagaga 129
Query: 409 aatttgctacttctaatagtatggtccatttcttttagtcgcatttgatgttacagatgt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 aatttgctacttctaatagtatggtccatttcttttagtcgcatttgatgttacagatgt 69
Query: 469 taatgatttggatttgtttttttattacatgttgtggataaactgatgcgattcttttaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 taatgatttggatttgtttttttattacatgttgtggataaactgatgcgattcttttaa 9
Query: 529 aaataaa 535
|||||||
Sbjct: 8 aaataaa 2
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7884
Number of Sequences: 1807
Number of extensions: 7884
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)