BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC07FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1471 1086 0.0
>3x_Contig1471
Length = 8032
Score = 1086 bits (548), Expect = 0.0
Identities = 632/654 (96%), Gaps = 5/654 (0%)
Strand = Plus / Plus
Query: 87 tctcttcttggagataatggcaaccatttttactttatttgttcgtcggggagctcgaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2695 tctcttcttggagataatggcaaccatttttactttatttgttcgtcggggagctcgaaa 2754
Query: 147 ttataggtgataataaaactaactaaagtaagtatcttgtatgtccaatggcacttatgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2755 ttataggtgataataaaactaactaaagtaagtatcttgtatgtccaatggcacttatgt 2814
Query: 207 tcataatgaaccagattgtaaagcgatgatgagaacaatattcgtcaaaccgtccgaatc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2815 tcataatgaaccagattgtaaagcgatgatgagaacaatattcgtcaaaccgtccgaatc 2874
Query: 267 gctgcgattggtatggtgaaaatgaaaaaatcatctgaaagacagtatttactcaccaac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2875 gctgcgattggtatggtgaaaatgaaaaaatcatctgaaagacagtatttactcaccaac 2934
Query: 327 acatgtggtgtatgggttaatgcttcagataaatgaacattttcaatgagataagtaccc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2935 acatgtggtgtatgggttaatgcttcagataaatgaacattttcaatgagataagtaccc 2994
Query: 387 aaaatggcaatgcagaaaaaattggaaaaaaaactaaaacaaaaatgtccgggtgagcag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2995 aaaatggcaatgcagaaaaaattggaaaaaaaactaaaacaaaaatgtccgggtgagcag 3054
Query: 447 tcccaggaacatatattttcaagtcacctggtaagcgtagaaaactcgccgtanacagat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3055 tcccaggaacatatattttcaagtcacctggtaagcgtagaaaactcgccgtaaacagaa 3114
Query: 507 aacttcaagaccgttcctccatttnctaatggggaatgtttctaaatatgatttatacgc 566
|||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||
Sbjct: 3115 aacttcaagaccgttcctccatttcctaatggggaa-gttcctaaataggatttatacgc 3173
Query: 567 gagatgttccacccccctgcattggtttatgtgaatactcgagagccttg-ggtaactcg 625
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3174 gagatgttcca-ccccctgcattggtttatgtgaatactcgagagccttgtggtaactcg 3232
Query: 626 catcacttatggaacagacaacacatttgtttcaaccaataataaaatgggaattaccat 685
||||||||| | ||||||||||||| |||||||||| |||||||||||||||| || |||
Sbjct: 3233 catcacttaggaaacagacaacacaattgtttcaacgaataataaaatgggaaataacat 3292
Query: 686 agggttttcagaacaatgttgcaattacggcgtgttacaagttgcatacttgtt 739
||| || ||| ||||||||||||| ||||||||| || || ||||||||||||
Sbjct: 3293 aggaattccag-acaatgttgcaatcacggcgtgtcac-agctgcatacttgtt 3344
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,770
Number of Sequences: 1807
Number of extensions: 13770
Number of successful extensions: 210
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)