BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC07RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1311 1178 0.0
>3x_Contig1311
Length = 7212
Score = 1178 bits (594), Expect = 0.0
Identities = 754/790 (95%), Gaps = 13/790 (1%)
Strand = Plus / Minus
Query: 43 cttggtccaaagattcgaatacagttctgtctt-ataggcaccttgagcaataaaggtct 101
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5233 cttggtccaaagattcgaatacagttctgtcttcataggcaccttgagcaataaaggtct 5174
Query: 102 tttcgaatttttccaaaaattccaaagatagcttatcttcaatggataaagcttcctcac 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5173 tttcgaatttttccaaaaattccaaagatagcttatcttcaatggataaagcttcctcac 5114
Query: 162 cgaccacagctttcatggcagcagcatccctaccaatggcatatttagcgtacaattggt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5113 cgaccacagctttcatggcagcagcatccctaccaatggcatatttagcgtacaattggt 5054
Query: 222 tagaaacatcaccgtggtcctttcttgtcataccttcaccgatagcagacttcattaatc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5053 tagaaacatcaccgtggtcctttcttgtcataccttcaccgatagcagacttcattaatc 4994
Query: 282 tcgatagggaaggcaaaacgttgattggtggataaatacccttattatctagttgacgat 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4993 tcgatagggaaggcaaaacgttgattggtggataaatacccttattatctagttgacgat 4934
Query: 342 cgacagaaatttgaccttctgtaatataaccnagtcaaatctggaattggatgtgtaata 401
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4933 cgacagaaatttgaccttctgtaatataacc-agtcaaatctggaattggatgtgtaata 4875
Query: 402 tcatcgttaggcattgtcaaaataggaatttgggtaatggaaccgttacgaccctccact 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4874 tcatcgttaggcattgtcaaaataggaatttgggtaatggaaccgttacgaccctccact 4815
Query: 462 ctaccagctctttcatagatggtggacaaatctgtgtacatgtaacctgggt-accacgt 520
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4814 ctaccagctctttcatagatggtggacaaatctgtgtacatgtaacctgggtaaccacgt 4755
Query: 521 ctacctgggac-tcttctctagcagcagagacttctctcaaagcatcagcataagatgac 579
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4754 ctacctgggacttcttctctagcagcagagacttctctcaaagcatcagcataagaggac 4695
Query: 580 atatcagtcaaaatgttcaaaacgtgtcttttcgtctggtatgcccaatattcagcagta 639
||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 4694 atatcagtcaaaatggtcaaaacgtgtctttcggtctggtatgccaaatattcagcagta 4635
Query: 640 gtcaaag-caatctaggagt-ataattctttc-atgggtggatcgtttg-caaatttaa- 694
||||||| |||||||||||| ||||||||||| |||| ||||||||||| |||||||||
Sbjct: 4634 gtcaaagccaatctaggagtaataattctttcaatggttggatcgtttgccaaatttaag 4575
Query: 695 aaaaaaaatgtttctttcc-aggaa-cattttctttcaaatcttgtttaaagattc-aac 751
|||| | ||| |||||||| ||||| ||||||||| |||||||||||||||| || | |
Sbjct: 4574 aaaagagatg-ttctttccaaggaaccattttcttcgaaatcttgtttaaagaatctagc 4516
Query: 752 ggtttcttaaattacaccccttgttgcaaaaacaatactggaattttttttaggaccata 811
||||||| || | |||||| | | |||||||||||||||| |||||| || | ||||||
Sbjct: 4515 ggtttctaaattaacacccatagctgcaaaaacaatactgaaattttcttcatgaccatc 4456
Query: 812 atgaacatcc 821
||||||||||
Sbjct: 4455 atgaacatcc 4446
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8408
Number of Sequences: 1807
Number of extensions: 8408
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)