BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZC08FM1.SCF screened BAC_end
         (927 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1538                                                        1144   0.0  

>3x_Contig1538 
          Length = 9120

 Score = 1144 bits (577), Expect = 0.0
 Identities = 664/689 (96%), Gaps = 3/689 (0%)
 Strand = Plus / Plus

                                                                       
Query: 86  ttttcgacatttatagataatacttctggacttcgctgttacgatggactcgctggtaat 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16  ttttcgacatttatagataatacttctggacttcgctgttacgatggactcgctggtaat 75

                                                                       
Query: 146 ttggcaatgcacctaatatgctctttattatacagtgaatttttttttgcgtcagaacta 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  ttggcaatgcacctaatatgctctttattatacagtgaatttttttttgcgtcagaacta 135

                                                                       
Query: 206 aatatgtatctcattaaacttgtataattatgaacctttaacttcaaaagcatcttctat 265
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 aatatgtatctcagtaaacttgtataattatgaacctttaacttcaaaagcatcttctat 195

                                                                       
Query: 266 tgctgaaacaatgacacattggtgaccacccaacactatctcgaaaaacacaaaaatgca 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgctgaaacaatgacacattggtgaccacccaacactatctcgaaaaacacaaaaatgca 255

                                                                       
Query: 326 aatgaccttcaatcgttaatatattaccggcattttacttatggttcgtcttccgcagta 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aatgaccttcaatcgttaatatattaccggcattttacttatggttcgtcttccgcagta 315

                                                                       
Query: 386 tttgtgcctttgtatgaatggcacggcaatttggatgagacatcaaatacgtataaagtg 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tttgtgcctttgtatgaatggcacggcaatttggatgagacatcaaatacgtataaagtg 375

                                                                       
Query: 446 atcatatattaccataagtaatcaaaacaatgtactgcacataatcaaacataaacacag 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atcatatattaccataagtaatcaaaacaatgtactgcacataatcaaacataaacacag 435

                                                                       
Query: 506 acgcgatgagatgcaactatacaaaatacgctgaaaccactgctaaacagtagcaaaaca 565
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 436 acgcgatgagatgcaactatacaaaaaacgctgaaaccactgctaaacagtagcaaaaca 495

                                                                       
Query: 566 tgtctgatgatcaggggacagatctgaatctaggtgagttagtcggaaacatactcgctg 625
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 496 tgtctgatgatcagggaacagatctgaatctaagtgagttagtcggaaacatactcgctg 555

                                                                       
Query: 626 cctccgatgatattattcggtcgtttgaaaacccacaaa-gcctgatgagccttaaaatg 684
           |||||||||||| ||||| |||||| ||| || |||||| || |||||||| | ||||||
Sbjct: 556 cctccgatgataatattccgtcgttagaagacacacaaaggcatgatgagcatcaaaatg 615

                                                                       
Query: 685 acaaccatcttttgggggaagatgattttttgccagattggctaccttatttctcaaata 744
           ||||| ||| | | |||||||||||| | |||||||||| |||||| ||| |||||||||
Sbjct: 616 acaacgatcatattggggaagatgatatcttgccagatttgctacc-tatatctcaaata 674

                                        
Query: 745 cctgaagatgaacatgcctcaagaccatt 773
           ||||| ||||| |||| ||||||||||||
Sbjct: 675 cctgatgatgagcatg-ctcaagaccatt 702


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6531
Number of Sequences: 1807
Number of extensions: 6531
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)