BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZC09RM1.SCF screened BAC_end
         (924 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1154                                                        1388   0.0  

>3x_Contig1154 
          Length = 6277

 Score = 1388 bits (700), Expect = 0.0
 Identities = 755/768 (98%), Gaps = 4/768 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   ttaaaaaatacatccgcagtactcattagctatcatgacatacagaaataaaacgtatgt 107
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4067 ttaaaaaatacatccgcag-actcattagctatcatgacatacagaaataaaacgtatgt 4125

                                                                        
Query: 108  tatgtattcaagctgtgccaaaaagttacaggcaaagattaaacacgatgaagaaccatt 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4126 tatgtattcaagctgtgccaaaaagttacaggcaaagattaaacacgatgaagaaccatt 4185

                                                                        
Query: 168  taacgccaaacggattccattattatctgagctactttgaaaatcactatagatttattt 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4186 taacgccaaacggattccattattatctgagctactttgaaaatcactatagaattattt 4245

                                                                        
Query: 228  acattaagtagaggtggatacaaaacttaatacgctgccgcagaattttaccaattcatc 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4246 acattaagtagaggtggatacaaaacttaatacgctgccgcagaattttaccaattcatc 4305

                                                                        
Query: 288  caatgattggcccttgcggtgattggtatcccaatgttgcagagcagtcttgatattttg 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4306 caatgattggcccttgcggtgattggtatcccaatgttgcagagcagtcttgatattttg 4365

                                                                        
Query: 348  atttgtgttattagaatgaattacatcaccatgcactctgaataagatggtaatatatgc 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4366 atttgtgttattagaatgaattacatcaccatgcactctgaataagatggtaatatatgc 4425

                                                                        
Query: 408  ctcatataactcaaagttcttgttggtagccaaaccttgagccaaactttcaatgaaccg 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4426 ctcatataactcaaagttcttgttggtagccaaaccttgagccaaactttcaatgaaccg 4485

                                                                        
Query: 468  acatagctcatcaaatggttgaaaagctttcaaagaacgaatctccaaatcaatatttga 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4486 acatagctcatcaaatggttgaaaagctttcaaagaacgaatctccaaatcaatatttga 4545

                                                                        
Query: 528  gggagtcatctggactaattcgtcaaggaatgctgaataatcgtttttctgcgaaccttc 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4546 gggagtcatctggactaattcgtcaaggaatgctgaataatcgtttttctgcgaaccttc 4605

                                                                        
Query: 588  tctaagtagcttagtgaaatcagattcgaactgagcaccaagttttcctggaagtttgaa 647
            |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 4606 tctaagtagcttagtgaaatcagattcgaactgagcaccaagttttcctgaaggtttgaa 4665

                                                                        
Query: 648  tttattcagttcactagcagcattagctttggcagcatttcgctcctgttgtagtttaga 707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4666 tttattcagttcactagcagcattagctttggcagcatttcgctcctgttgtagtttaga 4725

                                                                        
Query: 708  agaattcaaactcaaattctcagcggctttccttggctgaagcctcatcggccaccttat 767
             |||| |||||||||||||||||| || |||| ||||||||||||||||| |||||||||
Sbjct: 4726 ggaatccaaactcaaattctcagc-gccttccctggctgaagcctcatcgcccaccttat 4784

                                                            
Query: 768  ctttttgcaagttgtaagaagaatggnagcctgctctgggttaactgg 815
            | |||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 4785 c-ttttgcaagttgtaagaagaatgg-agcctgctctggtttaactgg 4830


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7128
Number of Sequences: 1807
Number of extensions: 7128
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)