BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC10FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1409 955 0.0
>3x_Contig1409
Length = 9404
Score = 955 bits (482), Expect = 0.0
Identities = 567/593 (95%), Gaps = 2/593 (0%)
Strand = Plus / Minus
Query: 87 tcttgtcgggatataccttggtgctacaacaagtctttttaactctaatgatgttttttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4972 tcttgtcgggatataccttggtgctacaacaagtctttttaactctaatgatgttttttc 4913
Query: 147 tgatcccaaagatttcttgttggggattcagaatttaggtgtgaaggatctctacttgac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4912 tgatcccaaagatttcttgttggggattcagaatttaggtgtgaaggatctctacttgac 4853
Query: 207 tccagaattactgtatttgataatggataaagccgctggattattggcgtcacaatctaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4852 tccagaattactgtatttgataatggataaagccgctggattattggcgtcacaatctaa 4793
Query: 267 acaaaacgcaagtctgaagaaagaagttcttttgaaaaatggatccactatctccagtgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4792 acaaaacgcaagtctgaagaaagaagttcttttgaaaaatggatccactatctccagtgg 4733
Query: 327 atttatgacaaatattcaaaatataatggtccctttcaatggccgtcctaaattcactac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4732 atttatgacaaatattcaaaatataatggtccctttcaatggccgtcctaaattcactac 4673
Query: 387 tatagaggcattgttagcaaaatactctcacttaggagtctcttcttcccaagtcaacta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4672 tatagaggcattgttagcaaaatactctcacttaggagtctcttcttcccaagtcaacta 4613
Query: 447 cgtctatgaacatcatttcaatccctttatatcgatgcgatcttacctaagnaattcccc 506
||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||
Sbjct: 4612 cgtctatgaacatcatttcaatccctttatatcgatgcgatcttacctaggaattccccc 4553
Query: 507 tgttgatatttatttttagccaatttgtttcagagaaagcattatcagtgaagtggattc 566
||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |
Sbjct: 4552 tgttgatatttatttggagccaatttgtttcagagaaggcataatcagtgaagtggatcc 4493
Query: 567 agataccattccaccgacagatttggaaaatattgttattttacaggattcagttttatt 626
||||||||||||||||||||| |||||||| |||| |||||||||||||| | || |
Sbjct: 4492 agataccattccaccgacagaattggaaaaatatgttcatttacaggattcaggtatagt 4433
Query: 627 tcccgtttgttccgattgtgtccattaataattcctgaaacttttgaaacatg 679
||||||||| |||| |||||||||| || | |||||||||| ||||| ||||
Sbjct: 4432 acccgtttgtaccga-tgtgtccatt-atcaatcctgaaactcttgaaccatg 4382
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7649
Number of Sequences: 1807
Number of extensions: 7649
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)