BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC10RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1631 1170 0.0
>3x_Contig1631
Length = 12284
Score = 1170 bits (590), Expect = 0.0
Identities = 668/687 (97%), Gaps = 7/687 (1%)
Strand = Plus / Plus
Query: 39 tcaaccttgtatcagttttgctatactatgcaacccgcctggcaccaacaatttccatta 98
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5284 tcaagcttgtatcagttttgctatactatgcaacccgcctggcaccaacaatttccatta 5343
Query: 99 tcattattcttaatagagaactctttttttctttttcttgaaatcctgtgaagaaaaaaa 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5344 tcattattcttaatagagaactctttttttctttttcttgaaatcctgtgaagaaaaaaa 5403
Query: 159 tactgaaaagaattgttaaagcgatgagatgagatgagatgaaatgagactgaaagtatt 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5404 tactgaaaagaattgttaaagcgatgagatgagatgagatgaaatgagactgaaagtatt 5463
Query: 219 tgatagcaaaaagattcattgtgaactgtccccatttggcagagcacacttttcattatc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5464 tgatagcaaaaagattcattgtgaactgtccccatttggcagagcacacttttcattatc 5523
Query: 279 ataatataaatacattattcagtaatttcaagatgggtttggcagcagcaaggaataaac 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524 ataatataaatacattattcagtaatttcaagatgggtttggcagcagcaaggaataaac 5583
Query: 339 aaaggtttggattggatccaagaaacacaacttggagtaacaatacatcaagatttggac 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5584 aaaggtttggattggatccaagaaacacaacttggagtaacaatacatcaagatttggac 5643
Query: 399 acaaacatctagagaaactaggatggaaacctggttccggtttgggattagttccagatt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5644 acaaacatctagagaaactaggatggaaacctggttccggtttgggattagttccagatt 5703
Query: 459 ctacaacatcacatatcaaggtttctatcaaagatgacaatcttgggttgggagcgaaac 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5704 ctacaacatcacatatcaaggtttctatcaaagatgacaatcttgggttgggagcgaaac 5763
Query: 519 tc-anaagatagagaagcaagatgaatttgatagtggtgaatgtacgggattggacgtct 577
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5764 tcaaaaagaaagagaagcaagatgaatttgatagtggtgaatgtacgggattggacgtct 5823
Query: 578 tccaaagattacttggaagattaaatggt-atgagcagacantttcagatgaattggatt 636
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 5824 tccaaagattacttggaagattaaatggtaatgagcagacaatttcagatgaattggata 5883
Query: 637 agcaaagaaccgacatta-tattaaccggaaatggggggatacacttttgttgaagggag 695
||||||||||||||| || ||| ||| |||||| |||||||||||||| |||||||||
Sbjct: 5884 agcaaagaaccgacaatattataaacgggaaat-gggggatacacttt--gtgaagggag 5940
Query: 696 aagttcttgtcagtacattgggatgct 722
|||| |||| |||||| |||||||||
Sbjct: 5941 aagtccttgcaagtaca-tgggatgct 5966
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,124
Number of Sequences: 1807
Number of extensions: 22124
Number of successful extensions: 3297
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)