BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC11FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 809 0.0
>3x_Contig1515
Length = 8855
Score = 809 bits (408), Expect = 0.0
Identities = 458/471 (97%), Gaps = 4/471 (0%)
Strand = Plus / Minus
Query: 86 atcataattcttcaaatcaactttatgttctaatgaaccttgctttcctacgaatccagc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 atcataattcttcaaatcaactttatgttctaatgaaccttgctttcctacgaatccagc 2963
Query: 146 aatatatttaatcatttccattttatccatagtactaaagtttcgtttgttgatctctac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 aatatatttaatcatttccattttatccatagtactaaagtttcgtttgttgatctctac 2903
Query: 206 tgcaaattttactggcaccatctcctctttgtggaagtgctgtggtagtactcgttcaca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 tgcaaattttactggcaccatctcctctttgtggaagtgctgtggtagtactcgttcaca 2843
Query: 266 aagttttgccaattcttccatactggcatgacatgaatcggtaattggtgttagtttctg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2842 aagttttgccaattcttccatactggcatgacatgaatcggtaattggtgttagtttctg 2783
Query: 326 cacaaatcttgttcttttcctcaagtcatgtggatcggctagatctctgatgattctatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 cacaaatcttgttcttttcctcaagtcatgtggatcggctagatctctgatgattctatg 2723
Query: 386 aacaaacttttctggaacaatcggttttcgggtcttcacatagactagacactcagtctg 445
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2722 aacaaacttttctggaacaatcggttttcgggtcttcacaaagactagacactcagtctg 2663
Query: 446 aaagtcgagctgctccaatattggtttggttttttttggtatcgactatggtaagtttat 505
|| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 2662 aaggtcgagctgctccaatattggttt-gttttttttggtatcgactatggtagttttat 2604
Query: 506 gggttttttaattcctcccaactcttgctggaagtttcttttcaattgaaa 556
|| ||||| | |||| |||||||||||| |||||| || |||||||||||
Sbjct: 2603 gg--ttttttagtccttccaactcttgct-gaagttcctcttcaattgaaa 2556
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,782
Number of Sequences: 1807
Number of extensions: 20782
Number of successful extensions: 2855
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)