BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZC11RM1.SCF screened BAC_end (957 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1803 973 0.0 >3x_Contig1803 Length = 52241 Score = 973 bits (491), Expect = 0.0 Identities = 540/551 (98%), Gaps = 4/551 (0%) Strand = Plus / Minus Query: 45 gcttgttttgcatctaaaaag-catatctagttcttctcattaggaagtctagacagttt 103 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 27976 gcttgttttgcatctaaaaaggcatatctagttcttctcattaggaagtctagacagttt 27917 Query: 104 cttgcgtattcgtatttcaaactatactttagttcaccaatagtgtaagggtaacggaag 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27916 cttgcgtattcgtatttcaaactatactttagttcaccaatagtgtaagggtaacggaag 27857 Query: 164 gagtcataatcaacatgaccaaatacagaaacattttcttgaccagctagtgcaacagga 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27856 gagtcataatcaacatgaccaaatacagaaacattttcttgaccagctagtgcaacagga 27797 Query: 224 agtttgtttcttggatcttcattgaataactcacaaattagaggggctcttgtaccatag 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27796 agtttgtttcttggatcttcattgaataactcacaaattagaggggctcttgtaccatag 27737 Query: 284 ttgtttgccaaatgttcagacatggcactcgaaagatggtatttttgggacaataaagca 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27736 ttgtttgccaaatgttcagacatggcactcgaaagatggtatttttgggacaataaagca 27677 Query: 344 gacaagttagggttccagttttcacctccgaccagtttcaatttcttagttacgcaaggt 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27676 gacaagttagggttccagttttcacctccgaccagtttcaatttcttagttacgcaaggt 27617 Query: 404 ttgctgttaaattggcctactttaacaacttcgtcaatggtttcttctgccatctctctg 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27616 ttgctgttaaattggcctactttaacaacttcgtcaatggtttcttctgccatctctctg 27557 Query: 464 taagtggtccatttaccaccagaaattgtcacccaaattggaagggagaggtgaacaaga 523 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 27556 taagtggtccatttaccaccagaaattgtca-ccaaattggaa-ggagaggtgaacaaga 27499 Query: 524 aatgagatcttaccaattgctggattgaatcagaaccaaagtcagcttttctttggatct 583 |||||||||| ||||||||||| | || |||||||| |||||||||||| |||||||| Sbjct: 27498 aatgagatctaaccaattgctgagtagatccagaaccagagtcagcttttc-ttggatct 27440 Query: 584 ttaactaaagg 594 ||||||||||| Sbjct: 27439 ttaactaaagg 27429 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,794 Number of Sequences: 1807 Number of extensions: 17794 Number of successful extensions: 392 Number of sequences better than 1.0e-20: 1 length of query: 957 length of database: 10,358,551 effective HSP length: 16 effective length of query: 941 effective length of database: 10,329,639 effective search space: 9720190299 effective search space used: 9720190299 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)