BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZC11RM1.SCF screened BAC_end
         (957 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1803                                                         973   0.0  

>3x_Contig1803 
          Length = 52241

 Score =  973 bits (491), Expect = 0.0
 Identities = 540/551 (98%), Gaps = 4/551 (0%)
 Strand = Plus / Minus

                                                                         
Query: 45    gcttgttttgcatctaaaaag-catatctagttcttctcattaggaagtctagacagttt 103
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 27976 gcttgttttgcatctaaaaaggcatatctagttcttctcattaggaagtctagacagttt 27917

                                                                         
Query: 104   cttgcgtattcgtatttcaaactatactttagttcaccaatagtgtaagggtaacggaag 163
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27916 cttgcgtattcgtatttcaaactatactttagttcaccaatagtgtaagggtaacggaag 27857

                                                                         
Query: 164   gagtcataatcaacatgaccaaatacagaaacattttcttgaccagctagtgcaacagga 223
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27856 gagtcataatcaacatgaccaaatacagaaacattttcttgaccagctagtgcaacagga 27797

                                                                         
Query: 224   agtttgtttcttggatcttcattgaataactcacaaattagaggggctcttgtaccatag 283
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27796 agtttgtttcttggatcttcattgaataactcacaaattagaggggctcttgtaccatag 27737

                                                                         
Query: 284   ttgtttgccaaatgttcagacatggcactcgaaagatggtatttttgggacaataaagca 343
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27736 ttgtttgccaaatgttcagacatggcactcgaaagatggtatttttgggacaataaagca 27677

                                                                         
Query: 344   gacaagttagggttccagttttcacctccgaccagtttcaatttcttagttacgcaaggt 403
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27676 gacaagttagggttccagttttcacctccgaccagtttcaatttcttagttacgcaaggt 27617

                                                                         
Query: 404   ttgctgttaaattggcctactttaacaacttcgtcaatggtttcttctgccatctctctg 463
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616 ttgctgttaaattggcctactttaacaacttcgtcaatggtttcttctgccatctctctg 27557

                                                                         
Query: 464   taagtggtccatttaccaccagaaattgtcacccaaattggaagggagaggtgaacaaga 523
             ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 27556 taagtggtccatttaccaccagaaattgtca-ccaaattggaa-ggagaggtgaacaaga 27499

                                                                         
Query: 524   aatgagatcttaccaattgctggattgaatcagaaccaaagtcagcttttctttggatct 583
             |||||||||| |||||||||||  | ||  |||||||| |||||||||||| ||||||||
Sbjct: 27498 aatgagatctaaccaattgctgagtagatccagaaccagagtcagcttttc-ttggatct 27440

                        
Query: 584   ttaactaaagg 594
             |||||||||||
Sbjct: 27439 ttaactaaagg 27429


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,794
Number of Sequences: 1807
Number of extensions: 17794
Number of successful extensions: 392
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)