BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZC12FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1205 0.0
>3x_Contig1785
Length = 37935
Score = 1205 bits (608), Expect = 0.0
Identities = 800/838 (95%), Gaps = 21/838 (2%)
Strand = Plus / Plus
Query: 88 ccttgtctcgttttcgtcatatgtggcgctatgctcaaaagatgtcatatttacaacagg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22072 ccttgtctcgttttcgtcatatgtggcgctatgctcaaaagatgtcatatttacaacagg 22131
Query: 148 ttcatccagaccgataatcctttttgcaatccattctttgaataatatgcaggtctagta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22132 ttcatccagaccgataatcctttttgcaatccattctttgaataatatgcaggtctagta 22191
Query: 208 aaatcaagtttgatcgcaattactgcttctactggataaaactcactgctagctacttta 267
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22192 aaatcaagtttgaacgcaattactgcttctactggataaaactcactgctagctacttta 22251
Query: 268 ctttttaccaaaatagacaacttcaatgtcgcatttttaccaaccaggacacaataccta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22252 ctttttaccaaaatagacaacttcaatgtcgcatttttaccaaccaggacacaataccta 22311
Query: 328 cccatacaaatcatgacttcaaaatgattgctctcctgttttgtatttatatcttatact 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22312 cccatacaaatcatgacttcaaaatgattgctctcctgttttgtatttatatcttatact 22371
Query: 388 catatattccaacttctagtattcccttaatttgtcctgtaaagttattctcttctttgt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22372 catatattccaacttctagtattcccttaatttgtcctgtaaagttattctcttctttgt 22431
Query: 448 ccaaaggcgttgcacttcaatcaataaattgacatggcaatgacagcgctccacgtataa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22432 ccaaaggcgttgcacttcaatcaataaattgacatggcaatgacagcgctccacgtataa 22491
Query: 508 aatatcatcaaaaatctcattgcgctcgagaacaagaccagtattaaaaatgaaactgtg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22492 aatatcatcaaaaatctcattgcgctcgagaacaagaccagtattaaaaatgaaactgtg 22551
Query: 568 gataaaagagaataaacttggtggggtaagttgattggaccgcagctcatttttattgta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22552 gataaaagagaataaacttggtggggtaagttgattggaccgcagctcatttttattgta 22611
Query: 628 agtccattttatggggtatataatttctgaattcgttgctttaagtttggggttaggttt 687
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||
Sbjct: 22612 agtccattttatggggtatataa-ttctgaattcgttgctttaagttt-gggttagg-tt 22668
Query: 688 tcatttagaaaccctatttaaggggaagttttgaaagttaatcaatcattactggcaggt 747
||| |||||||||||| |||| ||||||||||| |||||||||||||| ||||| || ||
Sbjct: 22669 tca-ttagaaaccctaattaa-gggaagttttg-aagttaatcaatca-tactgcca-gt 22723
Query: 748 gtctgtggcaatagggggaattaaagaactgccttagcaaactattaggtggaggataaa 807
|||||| |||||||||| | |||||| ||| |||||||||||| || || |||||||||
Sbjct: 22724 gtctgt-gcaatagggg--aataaagagctg-cttagcaaacta-taagtagaggataaa 22778
Query: 808 ttattgggctattgaaaaagactcc-taataatttttttgtggggaaagactggactttt 866
||||| | |||||||||||| |||| ||||||| | | ||| |||||||||| |||| ||
Sbjct: 22779 ttatt-gtctattgaaaaag-ctccttaataatatatatgt-gggaaagact-gactatt 22834
Query: 867 ttggnataacatgttttccttgctcgaattgttcgaaaagcttttatgggagttagac 924
||| ||||| ||||||| |||||| |||||||| ||||||||||| ||||||||||
Sbjct: 22835 ttgtaataac-tgttttcgctgctcg-attgttcggaaagcttttat-ggagttagac 22889
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7235
Number of Sequences: 1807
Number of extensions: 7235
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)