BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD01RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1608 0.0
>3x_Contig1738
Length = 21411
Score = 1608 bits (811), Expect = 0.0
Identities = 872/886 (98%), Gaps = 5/886 (0%)
Strand = Plus / Plus
Query: 48 cagcagtcccatactaaccatcatttaatccttttaaatcctaagtacagttcaagcaat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4910 cagcagtcccatactaaccatcatttaatccttttaaatcctaagtacagttcaagcaat 4969
Query: 108 ggcaaaatgatcaagtaccaagacatcagatagacccagtggtccaatccgatccatatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4970 ggcaaaatgatcaagtaccaagacatcagatagacccagtggtccaatccgatccatatt 5029
Query: 168 ctttggtgaacaaaactacgccaacggtcacaattgaacctgaatctttggatatttcgc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5030 ctttggtgaacaaaactacgccaacggtcacaattgaacctgaatctttggatatttcgc 5089
Query: 228 cttataatcattgcattgtcttgcctacatccttaaagtggctacttcctaagagtatta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5090 cttataatcattgcattgtcttgcctacatccttaaagtggctacttcctaagagtatta 5149
Query: 288 tcaatttggtacatataggtatcatctcaggtaccctatcaaacatgaacgaatgggaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5150 tcaatttggtacatataggtatcatctcaggtaccctatcaaacatgaacgaatgggaat 5209
Query: 348 caatgaaacccgtacctggaatgtatgacacagaagaacatatgataaattctacggaac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5210 caatgaaacccgtacctggaatgtatgacacagaagaacatatgataaattctacggaac 5269
Query: 408 agttcgtgatacattacaatttatggaggttagaggatactttgatcgcaataatcgatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5270 agttcgtgatacattacaatttatggaggttagaggatactttgatcgcaataatcgatg 5329
Query: 468 agaatgaagtgaaatacccagccattgtaacgaatttcatgactagaaatttagcacaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5330 agaatgaagtgaaatacccagccattgtaacgaatttcatgactagaaatttagcacaat 5389
Query: 528 tgcttagagacattaaggatataacaatattagtaaattcggacaaaataacagagttga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5390 tgcttagagacattaaggatataacaatattagtaaattcggacaaaataacagagttga 5449
Query: 588 aacagttgtcctatttagtccctcccgaatttattaccggttctatcaccaatttcattt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5450 aacagttgtcctatttagtccctcccgaatttattaccggttctatcaccaatttcattt 5509
Query: 648 tagctctaccaaggaaggaactcanagttattgttgtgccttctgagggtccaattggtt 707
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5510 tagctctaccaaggaaggaactcaaagttattgttgtgccttctgagggtccaattggtt 5569
Query: 708 ttgagaaatataatttccctaccgttgatgctttagtagatgaaaatgtcg-aattactt 766
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 5570 ttgagaaatataatttccctaccgttgatgctttagtagatg-aaatgtcgaaattactt 5628
Query: 767 tgctcgtacccgtcacagacagagtactatgtattcggaatggctaaagcttttggaaac 826
||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||
Sbjct: 5629 tgctcgtacccgtcacagacagagtactatgta-tcggaatgcttaaagc-tttggaaac 5686
Query: 827 ttgacgaatgtaccacaactcagggcgggttatatattttacgggtctttaatcaaatat 886
|||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct: 5687 ttgacgaatgtaccacaactcaaggcgggttatatatttaacgtgtctttaatcaaatat 5746
Query: 887 tggggattacacccgttctgttttttattgaccattattgtctagt 932
| ||||||||||||||||||||||||| |||| || ||||||||||
Sbjct: 5747 t-gggattacacccgttctgttttttagtgacgataattgtctagt 5791
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6357
Number of Sequences: 1807
Number of extensions: 6357
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)