BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD02RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1554 1522 0.0
>3x_Contig1554
Length = 8957
Score = 1522 bits (768), Expect = 0.0
Identities = 852/871 (97%), Gaps = 7/871 (0%)
Strand = Plus / Minus
Query: 50 ctatgatgggtcacaaagttagagttctaccaggtgagaagactttgcgtttgcattatg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2151 ctatgatgggtcacaaagttagagttctaccaggtgagaagactttgcgtttgcattatg 2092
Query: 110 ccaatactggtgcttacaacgccgattttgatggtgatgaaatgaatatgcacttcccac 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2091 ccaatactggtgcttacaacgccgattttgatggtgatgaaatgaatatgcacttcccac 2032
Query: 170 aaaacgaaaatgcaaaagctgaagcattgaatctagccaatactgactctcaatacttga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2031 aaaacgaaaatgcaaaagctgaagcattgaatctagccaatactgactctcaatacttga 1972
Query: 230 caccaacatccggttctccagtaagaggtcttatccaagatcacatttctgcaggtgttt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1971 caccaacatccggttctccagtaagaggtcttatccaagatcacatttctgcaggtgttt 1912
Query: 290 ggttaactagcaaagactcatttttcactagagaacaatatcagcagtatatttatggtt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1911 ggttaactagcaaagactcatttttcactagagaacaatatcagcagtatatttatggtt 1852
Query: 350 gtattcgtcctgaagatggacatgctactcgtaacaaattggtcactattcctccagcag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1851 gtattcgtcctgaagatggacatgctactcgtaacaaattggtcactattcctccagcag 1792
Query: 410 tcatgaagcctgaacctttatggactggtaaacaaataattactacagttttactgaaca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1791 tcatgaagcctgaacctttatggactggtaaacaaataattactacagttttactgaaca 1732
Query: 470 cttgtcctgctaacatgccaggtatcaatttgaactccaagaacaagatcaagaatgaat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1731 cttgtcctgctaacatgccaggtatcaatttgaactccaagaacaagatcaagaatgaat 1672
Query: 530 attggggcaagtcttcggaagagaataatgttgttttcaaagatggtcaattattatgtg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 attggggcaagtcttcggaagagaataatgttgttttcaaagatggtcaattattatgtg 1612
Query: 590 gtnatttagacaagtcacaatatggtgcctccaaattc-gtatcgttcattccctacacg 648
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1611 gtattttagacaagtcacaatatggtgcctccaaattcggtatcgttcattccctacacg 1552
Query: 649 aagtatatggcccagacgtagctgctaaagtgttatccgttctcggtagactattcacaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 aagtatatggcccagacgtagctgctaaagtgttatccgttctcggtagactattcacaa 1492
Query: 709 actacatcactgctaccgcatttacttgtggtatggacgatttgcgttt-acagctgagg 767
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1491 actacatcactgctaccgcatttacttgtggtatggacgatttgcgtttaacagctgagg 1432
Query: 768 ggtacaaat-gagaaatgacatt-ttcaaacattcgttgacatcggtagagttgccgcag 825
| |||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 1431 gtaacaaatggagaaatgacattcttcaaacatccgttgacatcggtagagttgccgcag 1372
Query: 826 cagaagtgacgaatcttagac-aagatgtcaattcagatgatggggagttgctcaaac-t 883
||||||||||||||| ||||| |||||||||| ||||||||||| ||||||||||||| |
Sbjct: 1371 cagaagtgacgaatc-tagacaaagatgtcaagtcagatgatggtgagttgctcaaacgt 1313
Query: 884 ttaaaagaatacttgcgtgatgattacaagt 914
||| | ||| ||||||||||||| ||||||
Sbjct: 1312 ttagaggaaatcttgcgtgatgataacaagt 1282
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6105
Number of Sequences: 1807
Number of extensions: 6105
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)