BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD03FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1392 948 0.0
>3x_Contig1392
Length = 9092
Score = 948 bits (478), Expect = 0.0
Identities = 556/581 (95%), Gaps = 1/581 (0%)
Strand = Plus / Plus
Query: 86 agcagttttagatttccaactcttttcaagcaaggacaaggcctggtgtttgactggtga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5560 agcagttttagatttccaactcttttcaagcaaggacaaggcctggtgtttgactggtga 5619
Query: 146 tgatactatttttttattcgacatggtatcacagaatgtatcaaaaaaattcaaaattga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5620 tgatactatttttttattcgacatggtatcacagaatgtatcaaaaaaattcaaaattga 5679
Query: 206 tgaatgtaaggacttaaaaaagctatgcatagttgatagcaatcgtattcttgtcgcttc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5680 tgaatgtaaggacttaaaaaagctatgcatagttgatagcaatcgtattcttgtcgcttc 5739
Query: 266 tcatcaaatttacttaatcgatgtcatttcaaagaaattgttgttacaataccctggcca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5740 tcatcaaatttacttaatcgatgtcatttcaaagaaattgttgttacaataccctggcca 5799
Query: 326 tatttcacctgtgtctttccttcaagtgaccacagatggaacagcatttttgagtgcatc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5800 tatttcacctgtgtctttccttcaagtgaccacagatggaacagcatttttgagtgcatc 5859
Query: 386 tcaagacgatagatttttgaatatttatgatttggacactaccaagactaagtccgtcct 445
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5860 tcaggacgatagatttttgaatatttatgatttggacactaccaagactaagtccgtcct 5919
Query: 446 agtagcggactcgaacgttatatcaatttcgatatctgaggattggtctcacgtgtcggg 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5920 agtagcggactcgaacgttatatcaatttcgatatctgaggattggtctcacgtgtcggc 5979
Query: 506 cacaacagaagatggngattttgctttctttgaagatcctttggtatcaatcaattcagg 565
|||||||||||||| ||| ||||| |||||||||| |||||||||||||||||||||||
Sbjct: 5980 aacaacagaagatggggatattgctatctttgaagaacctttggtatcaatcaattcagg 6039
Query: 566 gattaagatactttctggttagattttccaacaaaaaaaccaaactttaactttattaaa 625
|| ||||| || ||||||| |||| | | ||||||||||| ||||| |||||||||| ||
Sbjct: 6040 gaataagagacgttctggtaagatatccaaacaaaaaaacaaaactataactttatt-aa 6098
Query: 626 ggccaatttccccacccaaatggccttttatcaaaagtttt 666
|| | | |||| || ||| || |||| ||||||||||||||
Sbjct: 6099 ggtctaattccgcaaccagattgcctattatcaaaagtttt 6139
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,504
Number of Sequences: 1807
Number of extensions: 16504
Number of successful extensions: 181
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)