BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZD03FM1.SCF screened BAC_end (953 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1392 948 0.0 >3x_Contig1392 Length = 9092 Score = 948 bits (478), Expect = 0.0 Identities = 556/581 (95%), Gaps = 1/581 (0%) Strand = Plus / Plus Query: 86 agcagttttagatttccaactcttttcaagcaaggacaaggcctggtgtttgactggtga 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5560 agcagttttagatttccaactcttttcaagcaaggacaaggcctggtgtttgactggtga 5619 Query: 146 tgatactatttttttattcgacatggtatcacagaatgtatcaaaaaaattcaaaattga 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5620 tgatactatttttttattcgacatggtatcacagaatgtatcaaaaaaattcaaaattga 5679 Query: 206 tgaatgtaaggacttaaaaaagctatgcatagttgatagcaatcgtattcttgtcgcttc 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5680 tgaatgtaaggacttaaaaaagctatgcatagttgatagcaatcgtattcttgtcgcttc 5739 Query: 266 tcatcaaatttacttaatcgatgtcatttcaaagaaattgttgttacaataccctggcca 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5740 tcatcaaatttacttaatcgatgtcatttcaaagaaattgttgttacaataccctggcca 5799 Query: 326 tatttcacctgtgtctttccttcaagtgaccacagatggaacagcatttttgagtgcatc 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5800 tatttcacctgtgtctttccttcaagtgaccacagatggaacagcatttttgagtgcatc 5859 Query: 386 tcaagacgatagatttttgaatatttatgatttggacactaccaagactaagtccgtcct 445 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5860 tcaggacgatagatttttgaatatttatgatttggacactaccaagactaagtccgtcct 5919 Query: 446 agtagcggactcgaacgttatatcaatttcgatatctgaggattggtctcacgtgtcggg 505 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5920 agtagcggactcgaacgttatatcaatttcgatatctgaggattggtctcacgtgtcggc 5979 Query: 506 cacaacagaagatggngattttgctttctttgaagatcctttggtatcaatcaattcagg 565 |||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||| Sbjct: 5980 aacaacagaagatggggatattgctatctttgaagaacctttggtatcaatcaattcagg 6039 Query: 566 gattaagatactttctggttagattttccaacaaaaaaaccaaactttaactttattaaa 625 || ||||| || ||||||| |||| | | ||||||||||| ||||| |||||||||| || Sbjct: 6040 gaataagagacgttctggtaagatatccaaacaaaaaaacaaaactataactttatt-aa 6098 Query: 626 ggccaatttccccacccaaatggccttttatcaaaagtttt 666 || | | |||| || ||| || |||| |||||||||||||| Sbjct: 6099 ggtctaattccgcaaccagattgcctattatcaaaagtttt 6139 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,504 Number of Sequences: 1807 Number of extensions: 16504 Number of successful extensions: 181 Number of sequences better than 1.0e-20: 1 length of query: 953 length of database: 10,358,551 effective HSP length: 16 effective length of query: 937 effective length of database: 10,329,639 effective search space: 9678871743 effective search space used: 9678871743 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)