BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD03RM1.SCF screened BAC_end
(996 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1414 767 0.0
>3x_Contig1414
Length = 7923
Score = 767 bits (387), Expect = 0.0
Identities = 420/427 (98%), Gaps = 3/427 (0%)
Strand = Plus / Minus
Query: 61 gggtagatgagttcatatccctttttctgtagctgtttcctcatccctgctgtcttagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1507 gggtagatgagttcatatccctttttctgtagctgtttcctcatccctgctgtcttagct 1448
Query: 121 ctgaatatgacatcggattgggagtatccatgtaacatcaacactttcttggaggtgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 ctgaatatgacatcggattgggagtatccatgtaacatcaacactttcttggaggtgctc 1388
Query: 181 attttgcaaattgatgttcgtaacgttctgtgattccaaatgcagaatggtctactttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1387 attttgcaaattgatgttcgtaacgttctgtgattccaaatgcagaatggtctactttaa 1328
Query: 241 agatgcactgagttatgtaataagctatatttgtgttcattgcatgtatacggttgcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 agatgcactgagttatgtaataagctatatttgtgttcattgcatgtatacggttgcagg 1268
Query: 301 taactttttgttcgaagtgctgtaaagatcaacttttcatattgaaaactacagccttag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 taactttttgttcgaagtgctgtaaagatcaacttttcatattgaaaactacagccttag 1208
Query: 361 ttagagccgaaaggcagaccatgaaaaaaaaaaaaaaggattcataaatacaggtcaatg 420
||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 ttagagcggaagggcagacaatgaaaaaaaaaaaaaaggattcataaatacaggtcaatg 1148
Query: 421 gagaacgttagaatctatcatcatttttatcatgcaaatgaagctggggggaaactattt 480
||| ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||
Sbjct: 1147 gag-acgttagaatctatcatca-ttttatcatgcaaatgaagct-ggtggaaactattt 1091
Query: 481 ttctatt 487
|||||||
Sbjct: 1090 ttctatt 1084
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,902
Number of Sequences: 1807
Number of extensions: 15902
Number of successful extensions: 336
Number of sequences better than 1.0e-20: 1
length of query: 996
length of database: 10,358,551
effective HSP length: 16
effective length of query: 980
effective length of database: 10,329,639
effective search space: 10123046220
effective search space used: 10123046220
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)