BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD04FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1546 1340 0.0
>3x_Contig1546
Length = 12922
Score = 1340 bits (676), Expect = 0.0
Identities = 770/792 (97%), Gaps = 7/792 (0%)
Strand = Plus / Minus
Query: 87 gactgaaccgctcattactaacagtgattccaccagttccactggatccgccgtgttcaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3620 gactgaaccgctcattactaacagtgattccaccagttccactggatccgccgtgttcaa 3561
Query: 147 ctattaccggtgctacttcggattccagaggagccgtcatcttatgtgacaggaccttgt 206
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3560 ctattaccggtgctacttcggattccagaggagccgtcatcttaggtgacaggaccttgt 3501
Query: 207 gtttacgtagttccatccgcttagtaccttcagcttcgttgatcacaagtttctcctcca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3500 gtttacgtagttccatccgcttagtaccttcagcttcgttgatcacaagtttctcctcca 3441
Query: 267 caatagaatctgcagcaatattcgtagaagcatagttgattccactactaatgctactaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3440 caatagaatctgcagcaatattcgtagaagcatagttgattccactactaatgctactaa 3381
Query: 327 tgctaccatcaatacttggtagtgcacttacatcagaatcatcttcggcaccaatctgca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3380 tgctaccatcaatacttggtagtgcacttacatcagaatcatcttcggcaccaatctgca 3321
Query: 387 aagttccaagcgaaaactgcttgtaattcataaacgactcatcgctaccgacactgtaca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3320 aagttccaagcgaaaactgcttgtaattcataaacgactcatcgctaccgacactgtaca 3261
Query: 447 ggataagcaaaacgacactaaacaacacaagcgaggttaccactaatctattgcccttct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3260 ggataagcaaaacgacactaaacaacacaagcgaggttaccactaatctattgcccttct 3201
Query: 507 tacttgtcttaccggatctgagacccatatttcacaatgatttattgtcaattttcgcgt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3200 tacttgtcttaccggatctgagacccatatttcacaatgatttattgtcaattttcgcgt 3141
Query: 567 tgcactacgcataataacatatacctaaccacatgcaacaagagaaaggttgggatacct 626
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3140 tgcactacgcataaaaacatatacctaaccacatgcaacaagagaaaggttgggatacct 3081
Query: 627 ttataaatggtactatatagacatacctacatatatatatatgtggggtgtttataaatg 686
||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 3080 ttataaatgtaactatatagacatacctacatatatatatatgt-gtgtgtttataaatg 3022
Query: 687 tgattatgctttcctttggtactttcctcagaaaaacttgggtaccccaac-ttatttct 745
|||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 3021 tgattatgctttcctttggtactttcttcagaaaaacttggttaccccaactttatttct 2962
Query: 746 tgaagccttgttttgt-aagcgagagaagttatg-aaaaagtcacagaaaggttcgcaca 803
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2961 cgaagccttgttttgtaaagcgagagaagttatgaaaaaagtcacagaaaggttcgcaca 2902
Query: 804 gaactaacgtatctaagttcattccctcga-ttattggtgggtccctttggggaattcaa 862
||||||||||||||| |||||| |||||| |||||||| ||| ||||| || || ||||
Sbjct: 2901 gaactaacgtatctagtttcatt-cctcgatttattggt-ggttccttttggaaaatcaa 2844
Query: 863 gggaaaatcgaa 874
|||||||||||
Sbjct: 2843 aggaaaatcgaa 2832
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7611
Number of Sequences: 1807
Number of extensions: 7611
Number of successful extensions: 123
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)