BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZD04RM1.SCF screened BAC_end
         (936 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1126                                                        1477   0.0  

>3x_Contig1126 
          Length = 5421

 Score = 1477 bits (745), Expect = 0.0
 Identities = 866/892 (97%), Gaps = 11/892 (1%)
 Strand = Plus / Plus

                                                                        
Query: 48   tgaagacaggcgaggaaccagaattgaaaattgaaatcggtgccaaccgttacgatttac 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3294 tgaagacaggcgaggaaccagaattgaaaattgaaatcggtgccaaccgttacgatttac 3353

                                                                        
Query: 108  tgtgtatcgaaggtatcgctcaatctttgaatgaatttttgggtaacgttgaagctccag 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3354 tgtgtatcgaaggtatcgctcaatctttgaatgaatttttgggtaacgttgaagctccag 3413

                                                                        
Query: 168  agtataagttgagcaaaccaactaccaagttaatcattgaagaatctacaactcaaatta 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3414 agtataagttgagcaaaccaactaccaagttaatcattgaagaatctacaactcaaatta 3473

                                                                        
Query: 228  gaagttacgcttgtgctgccatcttaagaaatgttacattcaccgaagccaactatgcat 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3474 gaagttacgcttgtgctgccatcttaagaaatgttacattcaccgaagccaactatgcat 3533

                                                                        
Query: 288  cgttcatttctcttcaagataagttacactcaaacttgtgtagaaacagaactttagttg 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3534 cgttcatttctcttcaagataagttacactcaaacttgtgtagaaacagaactttagttg 3593

                                                                        
Query: 348  ccattggtacacacgatttggataccattaaaggtcctttccactacagagctgaaaagc 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3594 ccattggtacacacgatttggataccattaaaggtcctttccactacagagctgaaaagc 3653

                                                                        
Query: 408  caactgacatcaagtttgtgcccttaaatcaaagtaaggaatacgatggtgcagagttaa 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3654 caactgacatcaagtttgtgcccttaaatcaaagtaaggaatacgatggtgcagagttaa 3713

                                                                        
Query: 468  tcgaattgtacaaacaaccagaacaaaagaacaacttgggccgtttcgttcacattatcg 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3714 tcgaattgtacaaacaaccagaacaaaagaacaacttgggccgtttcgttcacattatcg 3773

                                                                        
Query: 528  aagattcccctgttttt-cctgtcatctacgatgacaataatgtcgtttgttctctgcct 586
            ||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||
Sbjct: 3774 aagattcccctgtttttacacttcatctacgatgacaataatgtcgtttgttctctgcct 3833

                                                                        
Query: 587  cctttgattaactctgaacactctaaaatttctctgaacaccaagaatatttttatcgaa 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3834 cctttgattaactctgaacactctaaaatttctctgaacaccaagaatatttttatcgaa 3893

                                                                        
Query: 647  gtttactgc-accgatagaaccaagtccgaagttgtcttggaccaaatcgttgctatgtn 705
            | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3894 g-ttactgcaaccgatagaaccaagtccgaagttgtcttggaccaaatcgttgctatgtt 3952

                                                                        
Query: 706  tctccgttattgtgaagaccaattcaccgtggagccagtggaaattgtttctgaa-acac 764
               |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 3953 ctcccgttattgtgaagaccaattcaccgtggagccagtggaaattgtttctgaacaca- 4011

                                                                        
Query: 765  acaatcaatctagaagtacccccaaatttcacttccaaaattatggacgtcaaggtcgat 824
            ||||||||||||| |||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct: 4012 acaatcaatctag-agtaaccccaaatttcactccaaaaattatggacgtcaaggtcgat 4070

                                                                        
Query: 825  tacatcaattcttgtctaagcctaaccttattcccagnaagagatctcaaagaacttgaa 884
            |||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 4071 tacatcaattcttgtctaggcctaaccttatccccag-aagagatctcaaagaacttg-a 4128

                                                                
Query: 885  aaaaaatggcgtttgaaagctacaaccttcctctgaacgacccaaacatctt 936
            |||| ||| || ||||||||||| ||||||||||| |||||| |||||||||
Sbjct: 4129 aaaagatgtcg-ttgaaagctac-accttcctctg-acgaccaaaacatctt 4177


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7162
Number of Sequences: 1807
Number of extensions: 7162
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)