BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD05FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1427 0.0
>3x_Contig1711
Length = 15491
Score = 1427 bits (720), Expect = 0.0
Identities = 794/815 (97%), Gaps = 3/815 (0%)
Strand = Plus / Plus
Query: 87 ccaaattatcatctgaacttgttcgtttgaataaattcacttttttgcatttattagaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7894 ccaaattatcatctgaacttgttcgtttgaataaattcacttttttgcatttattagaaa 7953
Query: 147 ggtaacttctacttatcgaggggagcattgatacatcattaatcttaaaagaaacatcat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7954 ggtaacttctacttatcgaggggagcattgatacatcattaatcttaaaagaaacatcat 8013
Query: 207 gtcattattattgcgattcattcaggaagaatggattgaacagttttcacctttctggtt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8014 gtcattattattgcgattcattcaggaagaatggattgaacagttttcacctttctggtt 8073
Query: 267 catcacttgcatgggaacgggtatctctgcctcaattctacatagctttccatatccggc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8074 catcacttgcatgggaacgggtatctctgcctcaattctacatagctttccatatccggc 8133
Query: 327 aaggtggttggtacgatgctcgtacattttctttgcaattgttagcatattgttcatttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8134 aaggtggttggtacgatgctcgtacattttctttgcaattgttagcatattgttcatttt 8193
Query: 387 tttacaggtcatcgcagttgtccaatttatcctatactctcagcattcacacaagaggaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8194 tttacaggtcatcgcagttgtccaatttatcctatactctcagcattcacacaagaggaa 8253
Query: 447 gaactattattggaatactttcaaaaacattgataacaatgtattttggggtacttatgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8254 gaactattattggaatactttcaaaaacattgataacaatgtattttggggtacttatgc 8313
Query: 507 catgggactccaaacaatcctcagctatatctttatgattgcaacaagcgatgaagttgt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8314 catgggactccaaacaatcctcagctatatctttatgattgcaacaagcgatgaagttgt 8373
Query: 567 caacacaaaacacgcaaagcccttaatgtatgtggtttatatattatggtggtacgatat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8374 caacacaaaacacgcaaagcccttaatgtatgtggtttatatattatggtggtacgatat 8433
Query: 627 tgcaatttcacttgttatcgcatggggtataacttttatcatctgngaagactacaatca 686
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8434 tgcaatttcacttgttatcgcatggggtataacttttatcatctggaaagactacaatca 8493
Query: 687 ttattttggtgagactccggacatcgagatggtcgattcaccggaaaacaaggctatgaa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8494 ttattttggtgagactccggacatcgagatggtcgattcaccggaaaacaaggctatgaa 8553
Query: 747 agaagatctacagacgtttttattgctccctgtcatcacgcttgttgtttgcgtggttag 806
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 8554 agaagatctacagacgtttttattgctccctgtcatcacgcttgttg-ttgcgtgttcag 8612
Query: 807 ccaacggtaccttattaaggtcggatctttttcaaagacctttcaatcgaaatatttagt 866
||| ||||||||| ||| ||| ||||| ||| ||| |||||||||| |||||| |||
Sbjct: 8613 ccagcggtaccttcataatgtctgatctatttacaaggactttcaatcggaatattcagt 8672
Query: 867 taggcaccctggattattaccttttttgatttggc 901
||| || ||| |||||||| |||||||||||||||
Sbjct: 8673 tagtca-ccttgattatta-cttttttgatttggc 8705
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6962
Number of Sequences: 1807
Number of extensions: 6962
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)